Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11000
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 95 6e-20
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_10373| Best HMM Match : PKD (HMM E-Value=5) 30 1.8
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_9311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_3521| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 28 9.7
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 95.1 bits (226), Expect = 6e-20
Identities = 44/79 (55%), Positives = 54/79 (68%)
Frame = +1
Query: 241 LPEAPKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEX 420
L +A A+ D+ K S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE
Sbjct: 167 LLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVEL 226
Query: 421 XXXXXXXXXXXAPGGHLGR 477
PGGHLGR
Sbjct: 227 QHVDRLNLLKLCPGGHLGR 245
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +2
Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 250
++AA+ +PAL+ ARGH IEKI E+PLV++D ++ + KT AV L+
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLK 169
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 12 GNMCRGGRMFAPTKPWRRWH 71
GNMCRGGRMFAPTK WR+WH
Sbjct: 90 GNMCRGGRMFAPTKTWRKWH 109
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/70 (40%), Positives = 35/70 (50%)
Frame = +3
Query: 564 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 743
NLP ++ + D LLK + R P R RA K NPL N ML+LNPYA KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276
Query: 744 KAILELPEGR 773
+L + R
Sbjct: 277 AEMLTVERRR 286
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 537 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 683
TP++Q F + +++N D++RL S+ + ++ N RVI+++ N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850
>SB_10373| Best HMM Match : PKD (HMM E-Value=5)
Length = 230
Score = 30.3 bits (65), Expect = 1.8
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 393 GASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLGRLRKMTACLVLLI 214
G + TL L +LTL T TLT T ++ L L R +T L L +
Sbjct: 19 GLTLTLTLALTLSLTLTLTLTLTLTLTLTLTLSVTLTLTLTRTLTLTRTLSLTLTLTLSL 78
Query: 213 SWTLSATTRGSSGIFSIMCPLA*TSAGT-PVAATL 112
S TLS T + G S+ L T GT V+ TL
Sbjct: 79 SLTLSLTLTLTLG-RSVTLTLTLTLTGTLTVSLTL 112
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 612 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 716
+SD I K+ NK++ ++ L+ LTNNKA LKL
Sbjct: 27 QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64
>SB_9311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = -1
Query: 381 TLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLGRLRKMTACLVLLISWTL 202
TL L +LTL T TLT T TL L + L +T L L ++ TL
Sbjct: 35 TLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTL 94
Query: 201 SATTR 187
+ T R
Sbjct: 95 TLTIR 99
>SB_3521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = -1
Query: 381 TLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLGRLRKMTACLVLLISWTL 202
TL L +LTL T TLT T TL L + L +T L L ++ TL
Sbjct: 55 TLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTLTL 114
Query: 201 SATTR 187
+ T R
Sbjct: 115 TLTIR 119
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 495 LSPDDETSKMASRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 361
L+ D+E + + L++V + + + T VA G S TL+L+++
Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601
>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 384 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 292
Q LIL+ Y + L+T+++ F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,693,531
Number of Sequences: 59808
Number of extensions: 517047
Number of successful extensions: 1874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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