Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11000
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   103   1e-22
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical p...    31   0.92 
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.5  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.5  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  103 bits (248), Expect = 1e-22
 Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
 Frame = +1

Query: 262 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 441
           W+DI KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+        
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLN 235

Query: 442 XXXXAPGGHLGRFVIWTQSAFGSL-TPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSL 618
               APGGHLGR +IWT+SAF  L T Y     +    ++  + P    P + +  FS +
Sbjct: 236 LLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVP---LPIMANSDFSRI 292

Query: 619 MRS 627
           +RS
Sbjct: 293 IRS 295



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 29/50 (58%), Positives = 44/50 (88%)
 Frame = +2

Query: 104 LGGSVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
           +  ++AA+G+PAL+QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRR 172



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
 Frame = +3

Query: 504 RQLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKL 680
           ++LD ++G+    S Q KK +++P P MAN+D +R+++S+E+ K +RAP K  +      
Sbjct: 257 KKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHR 316

Query: 681 NPLTNNKAMLKLNPYAAVLKR 743
           NPL     + KLNPYA++L++
Sbjct: 317 NPLKKRTLLYKLNPYASILRK 337



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +3

Query: 12  GNMCRGGRMFAPTKPWRRWH 71
           GNMCRGG MFAP K +RRWH
Sbjct: 92  GNMCRGGHMFAPLKVFRRWH 111


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = +2

Query: 161 IIEKIPELPLVVADKVQEINKTKQAVIFLRRPRHGLISLRCTSLSVFVLVRVKCAT 328
           I+EKI E    +  KV+E   + Q  IFL+  R  LIS    SL++ VL R+ CAT
Sbjct: 64  ILEKILE----IMGKVEEYESSNQPYIFLQFVRTALISTPFHSLAITVLERL-CAT 114


>Z81097-14|CAB03171.2|  221|Caenorhabditis elegans Hypothetical
           protein K07A1.10 protein.
          Length = 221

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 498 RIRQLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 650
           RIR +   FG W  P   +    L Q +       ++ K DEI+K   A N
Sbjct: 168 RIRDIQEYFGYWMDPKDPRFEVMLQQKEAEEKKAVKMAKRDEIQKKRFAEN 218


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +1

Query: 40  SPPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTHY*KDSRASPGCSRQSPGDQ 219
           S PR PG     ASTSD+ + P       + P   S  R     ++ AS   + Q PG  
Sbjct: 146 SAPRYPGNYNAFASTSDAPQYPGSS----QYPQGSSAPRYPGNYNAFASTSDAPQYPGSS 201

Query: 220 QDQTGCHLPEAP 255
           Q   G   P  P
Sbjct: 202 QYPQGSSAPRYP 213



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/72 (31%), Positives = 28/72 (38%)
 Frame = +1

Query: 40  SPPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTHY*KDSRASPGCSRQSPGDQ 219
           S PR PG     ASTSD+ + P       + P   S  R     ++ AS     Q PG  
Sbjct: 84  SAPRYPGNYNAFASTSDAPQYPGSS----QYPQGSSAPRYPGNYNAFASTSDEPQYPGSS 139

Query: 220 QDQTGCHLPEAP 255
           Q   G   P  P
Sbjct: 140 QYPQGSSAPRYP 151


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 591 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 746
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 591 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 746
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 591 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 746
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 456 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGSLTLDTTTVAHFTL 310
           S L+  +   ++ LH    +  E + + L++++ +E + TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,600,999
Number of Sequences: 27780
Number of extensions: 364275
Number of successful extensions: 1200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)