Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11000
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    27   0.19 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.26 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 86  EVDATVPTPPGLRGGEHTSTTTHVT 12
           ++D  +P PP +RGGE T  T   T
Sbjct: 370 DLDEPLPPPPPIRGGEWTFDTLRKT 394


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 567 LPQPKMANTDLTRLLKSDEIRKVLRAPNKRV 659
           LP P   N  L  L+ S E+R+  +APN  V
Sbjct: 490 LPPPYRLNKPLMSLITSSEVRQPGKAPNYSV 520



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 155 GHIIEKIPELPLVVADKVQEINKTKQAVIFLRRPRH 262
           GH  +++  LP ++ADK+ ++   K + +   +P+H
Sbjct: 239 GHWQDQM-SLPQMLADKIGKMVNQKFSELIQSKPQH 273


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 40  SPPRSPGGVGT 72
           SPPR PGGV T
Sbjct: 397 SPPRGPGGVPT 407


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 25  VVDVCSPPRSPGGVGTVASTSDSGERPWRQRCCYRRPSARSG*RTH 162
           VV+  S P     + +  S+S S   P +      +PS R+G  T+
Sbjct: 504 VVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETN 549


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 502 FGSLTPYSGHGRHHQNKRRTSTC 570
           F S   YS +  HH    R S+C
Sbjct: 429 FASGRYYSAYSLHHVRSSRESSC 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,134
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)