Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11000
         (777 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    96   2e-20
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    95   5e-20
At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar ...    31   0.64 
At3g18640.1 68416.m02368 zinc finger protein-related contains si...    29   2.6  
At4g19515.1 68417.m02871 disease resistance family protein simil...    29   3.4  
At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ...    29   3.4  
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    29   3.4  
At5g29000.2 68418.m03590 myb family transcription factor contain...    28   6.0  
At5g29000.1 68418.m03589 myb family transcription factor contain...    28   6.0  
At3g10790.1 68416.m01299 F-box family protein contains F-box dom...    28   6.0  
At4g25170.1 68417.m03624 expressed protein                             28   7.9  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 435
           A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE      
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRR 582
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 290



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = +3

Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 686
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NP
Sbjct: 266 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNP 325

Query: 687 LTNNKAMLKLNPYAAVLKRKAIL 755
           L N   M KLNPYA   KR ++L
Sbjct: 326 LKNLNVMFKLNPYAKTAKRMSLL 348



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +2

Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
           ++AAT VPALV ARGH IE +PE+PLVV+D  + + KT  A+  L++
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQ 179



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 12  GNMCRGGRMFAPTKPWRRWH 71
           GNMCRGGRMFAPTK WRRWH
Sbjct: 99  GNMCRGGRMFAPTKIWRRWH 118


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 48/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +1

Query: 259 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 435
           A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE      
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 436 XXXXXXAPGGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRR 582
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 289



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 39/83 (46%), Positives = 55/83 (66%)
 Frame = +3

Query: 507 QLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 686
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NP
Sbjct: 265 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNP 324

Query: 687 LTNNKAMLKLNPYAAVLKRKAIL 755
           L N   MLKLNPYA   KR ++L
Sbjct: 325 LKNLNVMLKLNPYAKTAKRMSLL 347



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = +2

Query: 113 SVAATGVPALVQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRR 253
           ++AAT VPALV ARGH IE +PE+PLVV+D  + + KT  A+  L++
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQ 178



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +3

Query: 12  GNMCRGGRMFAPTKPWRRWH 71
           GNMCRGGRMFAPTK WRRWH
Sbjct: 98  GNMCRGGRMFAPTKIWRRWH 117


>At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = -1

Query: 348 LTLDTTTVAHFTLTSTKTLRLVHLKDIRPCLGRLRKMTACLVLLISWTLSATTRGSSGIF 169
           L L      H T+      +  HLK +     +L+   A L  L   +L +   G SG+F
Sbjct: 25  LLLSKDYFVHGTVRDPDNEKYAHLKKLEKAGDKLKLFKADL--LDYGSLQSAIAGCSGVF 82

Query: 168 SIMCPLA*TSAGTPVAATLPP 106
            + CP+   S   P    + P
Sbjct: 83  HVACPVPPASVPNPEVELIAP 103


>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 38  VRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGHIIEKIPELPL 190
           V+P++A          P    GLG S  A GVPA+  ++   +E+I E+ L
Sbjct: 488 VQPNQATTQSNVVSSNPNQLWGLGMSTGAEGVPAVTASKISNVEEIQEVSL 538


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = -1

Query: 444 EVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDIR 265
           E+  VN QE+H GD        + ++ D  GS + +T T    ++ S K L     K +R
Sbjct: 101 EIFPVNKQEMHVGDSCTITKCGVYVINDAAGSSSGNTMTPQCSSMDSLKLLDGKGKKRLR 160

Query: 264 PCLGRLRKMTACLVLLISWTL 202
                L++    L L I+  L
Sbjct: 161 VNYAGLKQREKALFLYIACLL 181


>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase from Pinus taeda [GI:17978649],
           Eucalyptus gunnii [GI:2058311]
          Length = 321

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -1

Query: 321 HFTLTSTKTLRLVHLKDIRPCLGRLRKMTACLVLLISWTLSATTRGSSGIFSIMCPLA*T 142
           H T+      +  HLK +     +L+   A L  L   +L +   G SG+F + CP+   
Sbjct: 34  HGTVRDPGNEKYAHLKKLDKAGDKLKLFKADL--LNYGSLQSAIAGCSGVFHVACPVPSA 91

Query: 141 SAGTPVAATLPP 106
           S   P    + P
Sbjct: 92  SVPNPEVDLIAP 103


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 591 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELPEG 770
           TDL    KS+ I  V     ++ +   RK NP+T ++   K +P A  L ++ +   P+ 
Sbjct: 232 TDLLGTPKSETISGVRNDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAFDPKD 291

Query: 771 R 773
           R
Sbjct: 292 R 292


>At5g29000.2 68418.m03590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 413

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 460 GGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRR 582
           GG+ G ++  + S + +++    HGR+ QN+   ST P  R
Sbjct: 55  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 95


>At5g29000.1 68418.m03589 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 370

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 460 GGHLGRFVIWTQSAFGSLTPYSGHGRHHQNKRRTSTCPNRR 582
           GG+ G ++  + S + +++    HGR+ QN+   ST P  R
Sbjct: 12  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 52


>At3g10790.1 68416.m01299 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 319

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 193 CSRQSPGDQQDQTGCHLPEAPKAWSD 270
           CSR+ P       GC+    P+ W D
Sbjct: 99  CSREDPSSDHQTVGCYPDSYPRIWYD 124


>At4g25170.1 68417.m03624 expressed protein
          Length = 344

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 274 GYQTMPW-APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSS 149
           GY    W + +EDDSLFG V  +D V      L  +F+  S S
Sbjct: 103 GYDDFEWVSEEEDDSLFGSVPSVDEVQDAVSALQQVFDASSYS 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,433
Number of Sequences: 28952
Number of extensions: 351355
Number of successful extensions: 1181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)