Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10999
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   3.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.0  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   8.8  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   8.8  

>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 82  VISESLKSYLMPSPDDLPSKT 144
           +ISE LKSY   +PD+L S T
Sbjct: 506 LISEKLKSYFAENPDELLSLT 526


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 248 LSLTMYADVIRKNIPPSTSTKHVMNSAY 165
           ++L+    +  K+ PPSTST  +++S+Y
Sbjct: 135 VNLSTPKQIYSKHSPPSTSTSSIVSSSY 162


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 388 NFKNVCSIRRLQCLRVLKR 332
           +F++ CS  RLQC R +KR
Sbjct: 84  SFEDFCSKYRLQCPRAIKR 102


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 65  LPASPNMCDINIW 27
           +P  P +CD+NIW
Sbjct: 79  VPEGPQVCDLNIW 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,419
Number of Sequences: 5004
Number of extensions: 60228
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)