Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10999
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 33 0.19
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 30 1.7
11_06_0594 + 25349612-25352530 30 2.3
05_04_0447 + 21347786-21347974,21348104-21348169,21348266-213483... 29 3.0
10_07_0142 - 13352315-13352357,13352536-13352617,13352717-133528... 29 4.0
04_04_1663 - 35156098-35156140,35156273-35156354,35156506-351565... 29 4.0
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 4.0
01_07_0363 - 43066250-43066303,43066304-43066411,43066500-430665... 29 5.3
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 28 7.0
05_01_0108 - 709031-709204,709294-709359,709607-709714,709822-70... 28 7.0
04_03_0331 + 14510848-14511124,14511139-14511528,14511708-145119... 28 7.0
01_06_1459 - 37515753-37515765,37516026-37516107,37516194-375163... 28 7.0
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188... 28 9.2
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +3
Query: 147 RIQSAS--VCAVH-NVLRGSTRRNILPYNIGVHCQGQTKVDRAI 269
+++SAS + A H N ++ + +++LPY G+H G T+VDR +
Sbjct: 757 KVESASLEILADHANHVKSNDLKDLLPYGFGIHHAGLTRVDREL 800
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Frame = -2
Query: 368 YSPATMSSCAEAWDGSVCCASASKYLN---YF*SSCNSSVHFSLSLTMYADVIRKNIPPS 198
Y+ T S+C G C ++YL Y CN H ++ T A I N+
Sbjct: 268 YACTTGSNCQNISSGGYTCECTNRYLQGNPYILGGCNMQDHITVLETSEAQFIVTNVSVE 327
Query: 197 TSTKHVMNSAY*SALNSTVLLGKSSG 120
T + N + +L+ + G
Sbjct: 328 DGTLTISNLLNNTEYGREILITQGHG 353
>11_06_0594 + 25349612-25352530
Length = 972
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 442 KLLLVCESSNSSHYLFMTNFKNVCSIRRLQCLRVLKRGTAPC 317
KL ++C + SS +T +C +RRL+ L VL +G A C
Sbjct: 729 KLEILCYAEVSSG---LTGLMGICQLRRLRKLGVLLQGNAAC 767
>05_04_0447 +
21347786-21347974,21348104-21348169,21348266-21348373,
21348469-21348534,21348662-21348782,21348880-21348961,
21349052-21349094
Length = 224
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 675 LNLNKILYTQHIYPNNYGSDPTTV 604
+ +++ILY+ +YP+NYG P T+
Sbjct: 84 IKVDRILYSSVVYPHNYGFIPRTL 107
>10_07_0142 -
13352315-13352357,13352536-13352617,13352717-13352837,
13353089-13353196,13353317-13353382,13353480-13353547,
13353603-13353702
Length = 195
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 675 LNLNKILYTQHIYPNNYGSDPTTV 604
+ ++++LY+ +YP+NYG P T+
Sbjct: 77 IKVDRVLYSSVVYPHNYGFIPRTL 100
>04_04_1663 -
35156098-35156140,35156273-35156354,35156506-35156575,
35156682-35156747,35156976-35157083,35157328-35157393,
35158451-35158479,35158566-35158692
Length = 196
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 675 LNLNKILYTQHIYPNNYGSDPTTV 604
+ ++++LY+ +YP+NYG P T+
Sbjct: 73 IKVDRVLYSSVVYPHNYGFIPRTL 96
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 675 LNLNKILYTQHIYPNNYGSDPTTV 604
+ ++++LY+ +YP+NYG P T+
Sbjct: 74 IKVDRVLYSSVVYPHNYGFIPRTL 97
>01_07_0363 -
43066250-43066303,43066304-43066411,43066500-43066565,
43066787-43066815,43066993-43067131
Length = 131
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 675 LNLNKILYTQHIYPNNYGSDPTTV 604
+ ++++LY+ +YP+NYG P T+
Sbjct: 77 VKVDRVLYSSVVYPHNYGFIPRTL 100
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 18 RSFPDINIAHVWGCWKSVLSRSYIRKFEV 104
R F IAH W WKS ++ +Y++K ++
Sbjct: 207 RKFALQTIAHRWRQWKSDMNTNYVKKNKI 235
>05_01_0108 -
709031-709204,709294-709359,709607-709714,709822-709887,
710125-710153,710239-710374
Length = 192
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 669 LNKILYTQHIYPNNYGSDPTTV 604
++++LY+ +YP+NYG P T+
Sbjct: 78 VDRVLYSSVVYPHNYGFIPRTL 99
>04_03_0331 +
14510848-14511124,14511139-14511528,14511708-14511997,
14512080-14512154,14512194-14512409,14512727-14512795,
14512941-14513891
Length = 755
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 82 VISESLKSYLMPSPDDLPSKTVEFRALQYALFITCFVEVL--GGIFFLITSAYIVR 243
V ++++ +Y P P + LQ+ ITC ++V G ++L+ S Y R
Sbjct: 684 VFNDAMSTYNHVFPHPPPGTLLPILCLQFLTSITCNIQVFTAAGKYYLVDSGYANR 739
>01_06_1459 -
37515753-37515765,37516026-37516107,37516194-37516314,
37516407-37516472,37516558-37516665,37516755-37516820,
37516920-37516948,37517095-37517221
Length = 203
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 669 LNKILYTQHIYPNNYGSDPTTV 604
++++LY+ +YP+NYG P T+
Sbjct: 75 VDRVLYSSVVYPHNYGFIPRTL 96
>03_02_0768 +
11015855-11016063,11016285-11016359,11018296-11018833,
11019356-11020465
Length = 643
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 275 SCNSSVHFSLSLTMYADVIRKNIPPSTSTKHVMNSAY 165
+C + F + MY D+ ++I P+T T++++ S Y
Sbjct: 369 ACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGY 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,589
Number of Sequences: 37544
Number of extensions: 348470
Number of successful extensions: 783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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