Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10999
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_29542| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)             29   5.4  
SB_27833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)             29   5.4  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   7.1  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 157 ALQYALFITCFVEVLGGIFFLITSAYIVRDK 249
           +++YAL I  F+ VLGG+ F++ + YIV D+
Sbjct: 307 SMEYALLINTFIAVLGGLCFILCAFYIVADR 337


>SB_29542| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)
          Length = 221

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 350 SSCAEAWDGSVCCASASKYLNYF*SSCNSSVHFSLSLTMYADV 222
           ++C+  ++G +C A +  Y   F SSCN      L +T +  V
Sbjct: 45  ATCSRGYEGVLCAACSRGYYRMF-SSCNKCPTTPLVITQFVGV 86


>SB_27833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 574 QCDSEVTTPM*RSTSNNTSIKANTLKHFPFKINTRQTADT*LQYKLLLVCESSNSSHYL 398
           +C S  +     S + +TS  +N  +H P K++  Q  DT L+ +LL   ++++  H L
Sbjct: 199 RCPSTTSRLTDNSLAAHTSKDSNITEHAPVKLSKNQ-LDTSLRNRLLSYLQTNSGEHAL 256


>SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)
          Length = 816

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 350 SSCAEAWDGSVCCASASKYLNYF*SSCNSSVHFSLSLTMYADV 222
           ++C+  ++G +C A +  Y   F SSCN      L +T +  V
Sbjct: 203 ATCSRGYEGVLCAACSRGYYRMF-SSCNKCPTTPLVITQFVGV 244


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 323 SVCCASASKYLNYF*SSCNSSVHFSLSLTMYADVIRKNIPP 201
           S+  +++ K  NYF  +  SS  FS+SL    DV    IPP
Sbjct: 17  SILLSTSEKTFNYFKQNFRSSRVFSMSLQQ--DVYENTIPP 55


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 55   DAGSPYLVGVISESLKSYLMPSPDDLPSKTVEFRALQYALFITCFVEVLGGIF--FLITS 228
            +A   Y+  +I +  +  ++P+P D    +VEF+ L     +  F+  LG +F  ++I  
Sbjct: 2057 NANDVYVSFIIEDGRQLIVLPNPIDFQKVSVEFKRLDETGNVVAFI-ALGVVFGVYVIVI 2115

Query: 229  AYIVRDKLK 255
            A+  R   K
Sbjct: 2116 AWARRQDHK 2124


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 323  SVCCASASKYLNYF*SSCNSSVHFSLSLTMYADVIRKNIPP 201
            S+  +++ K  NYF  +  SS+ FS+SL    +V    IPP
Sbjct: 1305 SILLSTSEKTFNYFKQTFRSSMVFSMSLQQ--NVYENTIPP 1343


>SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 424 HKPRAVYIAVKYPRFA 471
           +KPRA YIA+ YPR A
Sbjct: 60  YKPRAAYIALPYPRAA 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,210,563
Number of Sequences: 59808
Number of extensions: 437032
Number of successful extensions: 996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)