Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 275  VVTRXXSTS*TYSALCSRTWTPGSWTN 355
            +VT       T S   + +W PGS TN
Sbjct: 1339 IVTTAKPAQSTTSVSTTTSWNPGSTTN 1365


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 183 RKAALVLAEGSSCASAAPNAPHPP 112
           ++++ +LAE  S +   P  P PP
Sbjct: 81  KRSSPILAEKVSVSPTTPPTPSPP 104


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 182 LIRYLASQYSDAKEQFIQ 235
           +++ L S+Y+D  E F+Q
Sbjct: 327 VVKSLESRYADLNENFLQ 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,292
Number of Sequences: 336
Number of extensions: 2705
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)