Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.052
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.6  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   2.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   5.9  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   5.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 25/66 (37%), Positives = 29/66 (43%)
 Frame = -3

Query: 452 SSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRKCSXXASRP 273
           SS  S SS   SSS      S  S K    S   S++  S SSS+  SKF   S   S  
Sbjct: 172 SSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTT 231

Query: 272 PLSCSA 255
           P S S+
Sbjct: 232 PASSSS 237



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = -3

Query: 485 GLCPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSK 306
           G   ++++   SS  + SS   SSS  P   S  S      S   S +  S SSS   SK
Sbjct: 138 GTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSK 197

Query: 305 FRKCSXXASRPPLSCSA 255
               S  +S+   S S+
Sbjct: 198 SSSSSSSSSKSSASPSS 214



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -3

Query: 476 PTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRK 297
           P+++    SS  S SS K SSS      S  S K    S   S++  S SSS   S    
Sbjct: 154 PSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPS 213

Query: 296 CSXXASR 276
            S  +S+
Sbjct: 214 SSKSSSK 220


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = -3

Query: 476  PTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRS 327
            PTNT    S+  +  S+  SSSG P   +K S   ++GS   S TL S S
Sbjct: 3741 PTNTLA--STFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSSS 3788


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 428 RKKRSIVKRSSGRCLSGISQWRSWLKKR 511
           R++RS+V + +  C+S    +  WLKKR
Sbjct: 97  RRRRSVVSKEALSCISLEIPYIKWLKKR 124


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 183 RKAALVLAEGSSCASAAPNAPHPPRDTS 100
           RK   V +EG S A+A  NA H P  T+
Sbjct: 114 RKIRCVYSEGPSTANAHANAHHQPAQTT 141


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 349 DQCRDPTLHLKETLEQHLGHPELESFTEEKEY 444
           D  RD   +L + L  H  HPE     E KEY
Sbjct: 106 DLIRDYVDYLLDKLSFHAQHPEFNGTFEYKEY 137


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 376 LKETLEQHLGH---PELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVP 546
           L  +L+Q + H    E ES  + ++    IL+ +FVGHK +   V     S+  ++ S  
Sbjct: 159 LTASLDQKIFHWVIEEPESMLDAEKKSSGILQTLFVGHKDIVERVRSLESSSVFISASAD 218

Query: 547 N 549
           N
Sbjct: 219 N 219


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -3

Query: 476 PTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRK 297
           PT++    SS  +  S  +SSS  P   S VS      +   S T  S SSS   S F  
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSS 605

Query: 296 CS 291
            S
Sbjct: 606 AS 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,378
Number of Sequences: 5004
Number of extensions: 44455
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)