Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10998
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 31 0.66
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 31 0.66
07_01_0054 - 417945-418157 30 2.0
07_03_0142 - 14251959-14252230,14252244-14252316 28 6.2
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 6.2
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 28 8.1
07_03_0630 - 20097672-20097772,20097983-20102012 28 8.1
05_01_0557 - 4879244-4879666 28 8.1
03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564... 28 8.1
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 28 8.1
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 210 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 91
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 449 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 489
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 210 LYWLARYLMRKAALVLAEGSSCAS--AAPNAPHPPRDTSERH 91
+ W R ++ AA VLA GSS S AAP P PP S RH
Sbjct: 495 ILWHRRDIILSAA-VLAAGSSTPSSAAAPAPPSPPEPPSPRH 535
>07_01_0054 - 417945-418157
Length = 70
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 225 CSLASLYWLARYLMRKAALVLAEGSSCASAAPNAPHP 115
CS+ S W R L K AEG S PN P P
Sbjct: 9 CSVKSKTWNERKLCTKRGTCRAEGFDYGSCYPNRPRP 45
>07_03_0142 - 14251959-14252230,14252244-14252316
Length = 114
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 407 TLSW-KVLRKKRSIVKRSSGRCLSGISQWR 493
+L W ++ ++R + +R SGRC G+ WR
Sbjct: 6 SLRWMRMAGRRRWLKRRRSGRCRRGLRSWR 35
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = -2
Query: 210 LYWLARYLMRKAALVLAEGSSCAS-------AAPNAPHPPRDTSERH 91
+ W R ++ AA VLA GSS S AAP P PP+ S RH
Sbjct: 536 ILWHRRDIILSAA-VLAAGSSTPSSSQAMTAAAPAPPSPPKPPSPRH 581
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 135 APNAPHPPRDTSERHAGEYSRQPHDKAYR 49
AP AP P + E+H E ++ HD R
Sbjct: 466 APPAPDSPEQSQEQHRDEEEQELHDNVVR 494
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 126 APHPPRDTSERHAGEYSRQPHDKAYRHLTRFALL 25
+PHP + S + EY R PHD A +L A++
Sbjct: 231 SPHPENEKSNKV--EYIRHPHDSAVTYLRNPAVI 262
>05_01_0557 - 4879244-4879666
Length = 140
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 195 RYLMRKAALVLAEGSSCASAAPNAPHPP 112
R L+R AA +L SS A+AAP PP
Sbjct: 6 RLLLRAAASLLRPSSSSAAAAPTPALPP 33
>03_02_0104 +
5645285-5645677,5645990-5646034,5646225-5646454,
5646549-5646624,5646705-5646781,5646960-5646990,
5647058-5647210,5647287-5647421,5647526-5647606
Length = 406
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 180 KAALVLAEGSSCASAAPNAPHPPRDTSERHAGEYSRQP 67
+ A V+A A+ PN P+ + E AG+ SR+P
Sbjct: 34 EGAAVVAVAPEAAAEGPNEPNAGEASREPDAGQASREP 71
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 343 VLDQCRDPTLHLKETLEQHLGHPE-LESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDS 519
+LD R H KE ++ + L +FTE+K + +++ R + +G E ++EAI +
Sbjct: 184 ILDNARK---HKKEYADEFVSVEHILRAFTEDKRFGQQLFRDLKIG----ENELKEAISA 236
Query: 520 ARG 528
RG
Sbjct: 237 VRG 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,503
Number of Sequences: 37544
Number of extensions: 322799
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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