Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10998
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 29 2.7
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 29 2.7
SB_29557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6) 29 2.7
SB_1905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_51930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 29 2.7
SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011) 28 8.3
>SB_48723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 58 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 98
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 136 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 176
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 27 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 67
>SB_29557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 99 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 139
>SB_29228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 99 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 139
>SB_23509| Best HMM Match : XET_C (HMM E-Value=3.6)
Length = 362
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 99 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 139
>SB_1905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 99 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 139
>SB_51930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 99 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 139
>SB_43286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 136 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 176
>SB_2750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 136 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 176
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 481 KPVEIVVEEAIDSARGLNESVPNHSCAVDSVFPPNLVGPPT 603
+P E++VEEAI +AR + P + P NL P+
Sbjct: 136 RPSEVIVEEAIAAARAAHTGQPAMQGTGPAAMPGNLFSSPS 176
>SB_47326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 177 AALVLAEGSSCASAAPNAPHP 115
A +V A G +C AA NAPHP
Sbjct: 38 ACVVNASGPACGLAAANAPHP 58
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 579 WEH*VHGTRMIRNTFIKTPRTIYRFFNHDLHWLMPDKHL 463
WE V G + + IK P +Y H WL P HL
Sbjct: 430 WEGGVRGVAFVHSPLIKRPGRVYDGLMHASDWL-PTLHL 467
>SB_13357| Best HMM Match : 7tm_1 (HMM E-Value=0.0011)
Length = 358
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 261 FSLVLTTLCWMNCSLASLYWLARYLMRKAALVLAEGSSCASAAPN 127
FSL++ +L W++ + L R+ + + L+ S C A+PN
Sbjct: 117 FSLLINSLTWVSLLTLLIISLERFKALPSTVHLSSLSRCGRASPN 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,374
Number of Sequences: 59808
Number of extensions: 358801
Number of successful extensions: 1140
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -