Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    26   1.3  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.2  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   9.2  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 407 CPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQS 309
           CP  CS +SF   +    ++ TL + S SRV S
Sbjct: 740 CPDKCSVISFSHSLSPISFNYTLSNSSLSRVLS 772


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 24/64 (37%), Positives = 27/64 (42%)
 Frame = -3

Query: 458 RISSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRKCSXXAS 279
           R S   S S  K S S        VS     GSR  SRT  SRS S+ ++     S   S
Sbjct: 404 RSSRSRSKSLSKSSRSRSRSLSRSVSRSRSRGSRSRSRTSQSRSRSKTRT-----SRSRS 458

Query: 278 RPPL 267
           R PL
Sbjct: 459 RTPL 462


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 448 EEILRKVFVGHKPVEIVVEEAIDSARGLNES 540
           EE+ R++  GH+P  + +E+ +     +  S
Sbjct: 491 EELQREMIDGHRPSLLCIEDPLTPGNDIGRS 521


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,426
Number of Sequences: 2352
Number of extensions: 11682
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)