Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    33   0.74 
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    33   0.74 
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    33   0.74 
BC105925-1|AAI05926.1|  562|Homo sapiens CPEB2 protein protein.        30   6.9  
BC103942-1|AAI03943.1|  575|Homo sapiens CPEB2 protein protein.        30   6.9  
BC103941-1|AAI03942.1|  568|Homo sapiens CPEB2 protein protein.        30   6.9  
BC103940-1|AAI03941.1|  589|Homo sapiens cytoplasmic polyadenyla...    30   6.9  
BC103939-1|AAI03940.2|  548|Homo sapiens CPEB2 protein protein.        30   6.9  
AY255519-1|AAP41553.1|  559|Homo sapiens cytoplasmic polyadenyla...    30   6.9  
AY247744-1|AAP37585.1|  589|Homo sapiens cytoplasmic polyadenyla...    30   6.9  
BX538213-1|CAD98072.1|  729|Homo sapiens hypothetical protein pr...    30   9.1  
BC117150-1|AAI17151.1|  729|Homo sapiens cytoplasmic polyadenyla...    30   9.1  
BC036899-1|AAH36899.1|  322|Homo sapiens CPEB4 protein protein.        30   9.1  
AB051460-1|BAB21764.1|  712|Homo sapiens KIAA1673 protein protein.     30   9.1  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -3

Query: 413  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSXXASRPPLSC 261
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -3

Query: 413  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSXXASRPPLSC 261
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 33.5 bits (73), Expect = 0.74
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -3

Query: 413  SGCPKCCSKVSFKCRVG---SRHWSRTLGSRSSSRVQSKFRKCSXXASRPPLSC 261
            +GC   CS   FKC  G     HW+    +            C+  A+RPP  C
Sbjct: 1009 AGCSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQATRPPGGC 1062


>BC105925-1|AAI05926.1|  562|Homo sapiens CPEB2 protein protein.
          Length = 562

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 285 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 344

Query: 574 FPP 582
           FPP
Sbjct: 345 FPP 347


>BC103942-1|AAI03943.1|  575|Homo sapiens CPEB2 protein protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 298 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 357

Query: 574 FPP 582
           FPP
Sbjct: 358 FPP 360


>BC103941-1|AAI03942.1|  568|Homo sapiens CPEB2 protein protein.
          Length = 568

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 291 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 350

Query: 574 FPP 582
           FPP
Sbjct: 351 FPP 353


>BC103940-1|AAI03941.1|  589|Homo sapiens cytoplasmic
           polyadenylation element binding protein 2 protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 312 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 371

Query: 574 FPP 582
           FPP
Sbjct: 372 FPP 374


>BC103939-1|AAI03940.2|  548|Homo sapiens CPEB2 protein protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 271 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 330

Query: 574 FPP 582
           FPP
Sbjct: 331 FPP 333


>AY255519-1|AAP41553.1|  559|Homo sapiens cytoplasmic
           polyadenylation element binding protein CPEB2b protein.
          Length = 559

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 282 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 341

Query: 574 FPP 582
           FPP
Sbjct: 342 FPP 344


>AY247744-1|AAP37585.1|  589|Homo sapiens cytoplasmic
           polyadenylation element binding protein CPEB2 protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 400 LGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HSCAVDSV 573
           L  P   S  +  E  E   RKVFVG  P +I  +E   S R     V +  H     S 
Sbjct: 312 LNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSY 371

Query: 574 FPP 582
           FPP
Sbjct: 372 FPP 374


>BX538213-1|CAD98072.1|  729|Homo sapiens hypothetical protein
           protein.
          Length = 729

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 382 ETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HS 555
           + L   LG P   S  +  E  E   RKVFVG  P +I  +E   S R     + +  H 
Sbjct: 447 QPLHSGLGSPHCFSH-QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHK 505

Query: 556 CAVDSVFPP 582
               S FPP
Sbjct: 506 AESKSYFPP 514


>BC117150-1|AAI17151.1|  729|Homo sapiens cytoplasmic
           polyadenylation element binding protein 4 protein.
          Length = 729

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 382 ETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HS 555
           + L   LG P   S  +  E  E   RKVFVG  P +I  +E   S R     + +  H 
Sbjct: 447 QPLHSGLGSPHCFSH-QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHK 505

Query: 556 CAVDSVFPP 582
               S FPP
Sbjct: 506 AESKSYFPP 514


>BC036899-1|AAH36899.1|  322|Homo sapiens CPEB4 protein protein.
          Length = 322

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 382 ETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HS 555
           + L   LG P   S  +  E  E   RKVFVG  P +I  +E   S R     + +  H 
Sbjct: 40  QPLHSGLGSPHCFSH-QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHK 98

Query: 556 CAVDSVFPP 582
               S FPP
Sbjct: 99  AESKSYFPP 107


>AB051460-1|BAB21764.1|  712|Homo sapiens KIAA1673 protein protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 382 ETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSARGLNESVPN--HS 555
           + L   LG P   S  +  E  E   RKVFVG  P +I  +E   S R     + +  H 
Sbjct: 430 QPLHSGLGSPHCFSH-QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHK 488

Query: 556 CAVDSVFPP 582
               S FPP
Sbjct: 489 AESKSYFPP 497


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,527,942
Number of Sequences: 237096
Number of extensions: 1759136
Number of successful extensions: 5221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5211
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)