Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    32   0.34 
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical p...    27   9.7  

>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 349 DQCRDPTLHLKETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEAIDSAR 525
           D   DPT ++KE LE+++ +   ++F E KE  E   +K     K VE  ++  +DS++
Sbjct: 499 DTKTDPTTNIKEFLERNM-YNAAKNFNEFKESIENREKKEAEARKKVEESLKRKLDSSK 556


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 261 FSLVLTTLCWMNCSLASLYWLARYLMRKAALVLAEGSSCAS 139
           FSL+  TL WM C + + + L   L++   L+ A+  S  S
Sbjct: 208 FSLLFNTLFWMTCCIITNFILLLLLIKSRCLLNAQTRSMHS 248


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 606 RRVLTC*LNVNERFIFDLLRCKKCLSFFKK 695
           R  L C +  N RF F    C  C SFF++
Sbjct: 51  RTCLVCTITENVRFHFGSTTCLACASFFRR 80


>AF068721-1|AAC19263.1|  369|Caenorhabditis elegans Hypothetical
           protein ZK1055.5 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 358 RDPTLHLKETLEQHLGHPELESFTEE 435
           RDPT++L++ +  H+G      F EE
Sbjct: 47  RDPTIYLRQNVHTHIGDISFLEFREE 72


>Z98866-14|CAB11553.1|  524|Caenorhabditis elegans Hypothetical
           protein Y49E10.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = -3

Query: 452 SSQYSFSSVKLSSSGCPKCCSKVSFKCRVGSRHWSRTLGSRSSSRVQSKFRKCSXXASRP 273
           SS    S+    SSG     S  S +   GS   S +    SSS + S  R+ S  +SR 
Sbjct: 99  SSSRQPSNGSFRSSGSSNGSSSSSRRSSNGSSSSSGSTSDNSSSNISSSSRRSSNGSSRS 158

Query: 272 PLSCSAWS 249
             S S  S
Sbjct: 159 SSSSSVGS 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,582,192
Number of Sequences: 27780
Number of extensions: 267092
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)