Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10998
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11830.1 68415.m01271 hypothetical protein                          30   1.7  
At3g07360.2 68416.m00878 armadillo/beta-catenin repeat family pr...    29   3.9  
At3g07360.1 68416.m00877 armadillo/beta-catenin repeat family pr...    29   3.9  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    28   5.1  
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam...    27   9.0  

>At2g11830.1 68415.m01271 hypothetical protein
          Length = 156

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 433 EKEYCEEILRKVFVGH-KPVEIVVEEAI 513
           E E C  +L++VF+ H KPV IV ++ I
Sbjct: 24  ETEKCVVVLKRVFINHYKPVRIVTQDLI 51


>At3g07360.2 68416.m00878 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 325

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 546 RNTFIKTPRTIYRFFNHDLHWLMPDKHLPEDLFTILL 436
           R  F ++P  I R  N  LH   PD+ L ED+ T LL
Sbjct: 69  RALFGESPDEITRLVNPLLHGSNPDEKLQEDVVTTLL 105


>At3g07360.1 68416.m00877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 460

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 546 RNTFIKTPRTIYRFFNHDLHWLMPDKHLPEDLFTILL 436
           R  F ++P  I R  N  LH   PD+ L ED+ T LL
Sbjct: 204 RALFGESPDEITRLVNPLLHGSNPDEKLQEDVVTTLL 240


>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 165 LAEGSSCASAAPNAPHPPRDTSERHAGEYSRQPH 64
           ++ G S  ++APN  HPP   S++        PH
Sbjct: 262 MSPGGSIFTSAPNQSHPPGSASDKGESGPGEPPH 295


>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 198

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 479 CPTNTFLRISSQYSFSSVKLSSSGCPKCCSKVSFKCR 369
           CP++T L  S+Q   SS   SSS  P   S  SF C+
Sbjct: 69  CPSSTHLSCSTQPPSSSAASSSSSAPPPAS--SFTCQ 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,971
Number of Sequences: 28952
Number of extensions: 246862
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)