Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10997
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.69 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   8.5  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 316 TRALRPQIVRPSKPRTASSASVDLRIQQMR 227
           T ++RP ++  SKPR A +  V+ RI+Q +
Sbjct: 97  TGSIRPGVIGGSKPRVA-TPEVENRIEQYK 125


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 527 PLSLTLSFPFEGTFYV 574
           PL+L L FP++G F V
Sbjct: 208 PLNLGLDFPYQGKFEV 223


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 202 THSSVDHNMKRHLQVQVY*HYSPNLQHK 119
           T S  +H+M  H+Q Q   H+ P+ Q +
Sbjct: 159 TQSMNNHHMGHHMQEQHPQHHQPHHQQQ 186


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 202 THSSVDHNMKRHLQVQVY*HYSPNLQHK 119
           T S  +H+M  H+Q Q   H+ P+ Q +
Sbjct: 161 TQSMNNHHMGHHMQEQHPQHHQPHHQQQ 188


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 624 SNSISWNL*TATVIENAT*NVPSNGNES 541
           SN +   L + + +   T NVPSNG  S
Sbjct: 57  SNGLVTTLASGSSLNGLTNNVPSNGLSS 84


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 306 YDRKSSVHPNHVLRLQHPWIFEFNKCE 226
           ++ ++  +P+H ++LQH    +FN  E
Sbjct: 97  HELETKFNPHHEIKLQHLHQSKFNPHE 123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,603
Number of Sequences: 336
Number of extensions: 3277
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)