Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10997
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.027
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 33 0.035
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.062
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 32 0.11
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.19
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.57
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 1.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 1.0
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 28 1.3
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.3
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 2.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 27 3.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.1
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 4.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 5.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 7.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 7.1
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 26 7.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.4
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 25 9.4
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.9 bits (74), Expect = 0.027
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFED 249
+++VG+LGN+ + L AFS Y L V R+ GF FV F+D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKD 79
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 33.5 bits (73), Expect = 0.035
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRML 261
VYVG++ + + EL+ F+ G + V + +P GFA++EF +P ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLV 109
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.062
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 112 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDP 252
C VYVG++ ++ ++ D F GP+++ + + P G+ F E+ DP
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 253 VDLRIQQMRSLEDFLQPTHSSV-DHNMKRHLQVQVY*HYSPNLQHKLCSHHS 101
+D +++R+ D LQ H ++ DHN Q+Q+Y Y N + ++ HS
Sbjct: 595 LDALYERIRAERDALQDVHRAICDHNEYLQTQLQIYGSYLNNARSQIKPSHS 646
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.1 bits (67), Expect = 0.19
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH AR+C
Sbjct: 19 CYNCGENGHQAREC 32
Score = 29.9 bits (64), Expect = 0.43
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 29.1 bits (62), Expect = 0.76
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH ARDC
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH RDC
Sbjct: 60 CYACGTAGHLVRDC 73
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+ +++VG + A++ ++ D F YG + + + GF FVE ED R
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDAR 48
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 249
++++ +L + ++ +L+ F +G L V + NP GFA+++F D
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEF 243
V++G+L ++ + E+E+AF +G + ++ + + AFV F
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHF 341
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +1
Query: 82 ASSTMSRYGDCK-VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 243
+SS Y D +Y+G+L + ++ ++ FS +G ++ + R+ GFAF+++
Sbjct: 20 SSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Query: 244 EDPR 255
ED R
Sbjct: 80 EDQR 83
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
+YV +L S + FS YG ++++W+ +P A V +E
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYE 43
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFA 231
L + S M + V+VG+L A + L F G + V + R+P GFA
Sbjct: 255 LRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFA 314
Query: 232 FVEFED 249
+++F+D
Sbjct: 315 YIQFKD 320
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 246
+YVG L + + ++ FS +GP+ + ++RN +AF+EFE
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFE 154
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 321 FLHGLYDRKSSVHPNHVLRLQHPWIFEFNK 232
F+ ++R P V L HPWI +F K
Sbjct: 1282 FIEQCFERDPEQRPRAVDLLTHPWITDFRK 1311
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +1
Query: 112 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRMLK 264
C V+VG L N L F YG + V + G+ +V+FE P K
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFED 249
V+VG++ + S+ ++ + F+ GP++ + +P G+ F EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRML 261
MSR +YV + EL F +GPL + R FAFVE+ED R
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 262 KTQY 273
+ Y
Sbjct: 61 EDAY 64
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 249
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A+V F +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHN 130
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG +GH+ + C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEFED 249
DC +YVG+L S L D F+ G + +A P GF V+FE+
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFEN 329
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 317 YTGSTTANRPSIQTTYCVFSIRGSSNSTNAKPG 219
Y+ A P++ T C+F ++ S N T PG
Sbjct: 144 YSAQVIAQCPNLPT--CIFHVKFSPNPTQTSPG 174
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 243
++V +L + +L + FS GP+++ V NP G+ FV F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 387 AEEADANEVVDPGCHNRDPH*TFLH 313
AE+ + E++D HN+DP+ L+
Sbjct: 970 AEDMEYTELLDQASHNKDPYQRILY 994
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAFVEFED 249
+YVG+L N + +L AFS R + + N P FVEFE+
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEE 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,938
Number of Sequences: 5004
Number of extensions: 53289
Number of successful extensions: 157
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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