Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10997
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 8e-16
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 72 6e-13
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 52 7e-07
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 37 0.021
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.037
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.086
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 34 0.15
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 33 0.20
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 33 0.26
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08) 32 0.61
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014) 31 0.80
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 1.1
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.1
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 30 1.9
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 30 2.5
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.3
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 29 4.3
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 29 4.3
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 5.7
SB_15765| Best HMM Match : HTH_7 (HMM E-Value=8.8) 29 5.7
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 29 5.7
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_25510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28) 28 9.9
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047) 28 9.9
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074) 28 9.9
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 81.4 bits (192), Expect = 8e-16
Identities = 37/61 (60%), Positives = 47/61 (77%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRMLKTQYVVWMDGR 294
KVY+G LG+NASK E+E+ F YYGPL++VWVARNPPGFAF F+D R + V +DGR
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDDRRDAE-DAVRELDGR 91
Query: 295 F 297
+
Sbjct: 92 Y 92
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/63 (44%), Positives = 33/63 (52%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DAEDAVR LDGR ICG+R RVE++ CY+CG GH+A
Sbjct: 80 DAEDAVRELDGRYICGQRVRVELAK----------GPSRGRPRMGSNEKCYECGRVGHFA 129
Query: 435 RDC 443
RDC
Sbjct: 130 RDC 132
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 76.2 bits (179), Expect = 3e-14
Identities = 35/61 (57%), Positives = 46/61 (75%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRMLKTQYVVWMDGR 294
+VY+G++G+NASK E+E F +GPLR+VWVARNPPGFAF FED R + V +DGR
Sbjct: 3 RVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAE-DAVRELDGR 61
Query: 295 F 297
+
Sbjct: 62 Y 62
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DAEDAVR LDGR ICG+RARVE++ CY+CG GH+A
Sbjct: 50 DAEDAVRELDGRYICGQRARVELAK----------GPSRGRPRQASNEKCYECGRVGHFA 99
Query: 435 RDC 443
RDC
Sbjct: 100 RDC 102
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 71.7 bits (168), Expect = 6e-13
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
K+YVG+LG NA ELE AF +G L VWVARNPPGFAFVE+ED R
Sbjct: 5 KLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYR 51
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSN 329
DAE+AVR LDG +C R RVE SN
Sbjct: 52 DAEEAVRELDGANVCDRTIRVEFSN 76
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---PPGFAFV 237
L++ ++ S DC+VYVG+L + + +L D F YG + +V + P FAFV
Sbjct: 246 LSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFV 305
Query: 238 EFEDPR 255
EFEDPR
Sbjct: 306 EFEDPR 311
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVE 320
DAEDAV+G DG G R RVE
Sbjct: 312 DAEDAVKGRDGHEFDGYRIRVE 333
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+C+VY+G L ++ ++ F YG LR++ + N + FVEFED R
Sbjct: 2 NCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFEDDR 47
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 35.9 bits (79), Expect = 0.037
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 112 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDP 252
C+VYVG + + + AF +GP+ + ++ +P GFAFVE++ P
Sbjct: 102 CRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLP 153
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 34.7 bits (76), Expect = 0.086
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CYDCG+ GH+AR+C
Sbjct: 627 CYDCGEEGHFAREC 640
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP 252
K+YV L N +K +++ FS YG ++ V + + GFA+VE+ DP
Sbjct: 1158 KLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDP 1208
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 246
K++VG L +K L++ FS YG L V + + P GFAFV+F+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFK 78
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Frame = +1
Query: 70 TIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAFV 237
+IQ+ S + +Y+ D + K LE F YG + ++ + R GF +V
Sbjct: 49 SIQELLSHKEEHDQRTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYV 108
Query: 238 EFED----PRMLKTQYVVWMDGRFAVVEP 312
+E+ R L +++ DG++ + EP
Sbjct: 109 TYENAESAQRALAGTHII--DGKWVIAEP 135
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEF 243
+CK Y+G+L ++ +L+D FS Y + +V V + P GFAFV F
Sbjct: 229 ECKCYIGNLDFKVNEADLQDRFSRYDVV-DVQVISDRETQRPRGFAFVTF 277
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 61 Y*LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN 216
Y LTI K T D K++VG + +A + +L FS +G + + V RN
Sbjct: 197 YELTILKDKYTGQHKDDRKLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 32.3 bits (70), Expect = 0.46
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +1
Query: 73 IQKASSTMSRY----GDCKVYVGDLGNNASKPELEDAFSYYG 186
+ + S +S+Y CKV+VG++G EL+D F Y+G
Sbjct: 62 VGEVSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFG 103
>SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08)
Length = 59
Score = 31.9 bits (69), Expect = 0.61
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+ARDC
Sbjct: 10 CYKCGKTGHFARDC 23
>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
Length = 344
Score = 31.5 bits (68), Expect = 0.80
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CYDCG+ H+AR+C
Sbjct: 299 CYDCGEERHFAREC 312
>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+ARDC
Sbjct: 123 CYRCGKSGHFARDC 136
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CGD H ARDC
Sbjct: 99 CYTCGDESHIARDC 112
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG +GH +RDC
Sbjct: 28 CYSCGKKGHISRDC 41
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C + GH+ARDC
Sbjct: 78 CYRCQETGHFARDC 91
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH RDC
Sbjct: 142 CYKCGNTGHIRRDC 155
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C GH+ARDC
Sbjct: 56 CYRCNMSGHFARDC 69
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 76 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPL---RNVW--VARNPPGFAFVE 240
QK SS + V+VG++ AS+ +L++ FS GP+ R V+ P G+ F E
Sbjct: 13 QKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCE 72
Query: 241 FED 249
++D
Sbjct: 73 YKD 75
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 85 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFED 249
S+ + Y +YVGDL + ++ L + FS G + ++ V R G+A+V F+
Sbjct: 4 STGAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQ 63
Query: 250 P 252
P
Sbjct: 64 P 64
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAV L+GR + G R VE S
Sbjct: 734 DAEDAVHDLNGRDLIGERVVVEFS 757
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+AR+C
Sbjct: 202 CYKCGKYGHFAREC 215
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -2
Query: 301 PQIVRPSKPRTASSASVDLRIQQMRSLEDFLQPTHSSVDHNMKRHLQ 161
P++V S P T+S + + R++ + + DFLQ HS V N+ ++
Sbjct: 773 PRVV--SAPSTSSDLNSNQRVKSLENSLDFLQAQHSQVLDNLHDEIE 817
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 29.9 bits (64), Expect = 2.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG+ GHY+R+C
Sbjct: 405 CHKCGETGHYSREC 418
Score = 28.7 bits (61), Expect = 5.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG+ GH+AR+C
Sbjct: 382 CHKCGEVGHFAREC 395
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+++VG L +LE+ F YG L + + F+E+EDPR
Sbjct: 7 QLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYEDPR 50
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG--FAFVEFED 249
++VG++ + +L++AF YG + +V + + P +AFV+F +
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAE 296
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG+ GH+A DC
Sbjct: 680 CFRCGEEGHWAEDC 693
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG RGH+AR C
Sbjct: 536 CFHCGMRGHWARSC 549
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C + GH+AR+C
Sbjct: 521 CYKCNETGHFAREC 534
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C + GH+AR+C
Sbjct: 603 CYKCNETGHFAREC 616
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C + GH+AR+C
Sbjct: 26 CYKCNETGHFAREC 39
>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1958
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+RGH A C
Sbjct: 113 CYNCGERGHVAIGC 126
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEF 243
A R D +YVG L S+ + + F GP+ NV + ++ G+ FVEF
Sbjct: 3 AGPIAERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEF 61
>SB_15765| Best HMM Match : HTH_7 (HMM E-Value=8.8)
Length = 116
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 521 PQPLSLTLSFPFEGTFY-VAFSITVAV*RFQEIELDVL*FK 640
P+ L++TLSFP + FY + F +++ R Q IE ++ +K
Sbjct: 12 PKVLNITLSFPCKTLFYEIHFYLSLQRQRIQAIETEIEGYK 52
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+RGH A C
Sbjct: 370 CYNCGERGHVAIGC 383
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 28.7 bits (61), Expect = 5.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+RGH A C
Sbjct: 237 CYNCGERGHVAIGC 250
>SB_25510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 142 YSPNLQHKLCSHHSVTSWTML 80
YS ++Q+ LC++ SV SWT L
Sbjct: 3 YSLSIQYTLCAYLSVRSWTRL 23
>SB_20265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY C D H+ARDC
Sbjct: 3 CYRCHDPSHFARDC 16
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFEDPRMLK 264
K++VG L + L + F YG L +V V + GF +V F D ++ +
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYKVTR 69
>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG R HYAR C
Sbjct: 203 CHKCGKRNHYARMC 216
>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
Length = 815
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -2
Query: 322 ISTRALRPQIVRPSKPRTASSASVDLRIQQMRSLEDFLQPTHSSVDHNMKRHL 164
++T P+ +RP A+++ I+Q + + F+ P S HN H+
Sbjct: 671 LNTSKSIPENMRPLSASDVGRAAINPPIKQKATSQGFVSPEGGSPPHNSGEHI 723
>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
Length = 632
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG R HYAR C
Sbjct: 238 CHKCGKRNHYARMC 251
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYG 186
K+Y+G+L N+ + E+E AF +G
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFG 33
>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
Length = 996
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG R HYAR C
Sbjct: 64 CHKCGKRNHYARMC 77
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 441 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRD 334
SH+ ++ R ++N E A+ +D GC N D
Sbjct: 566 SHQSTISNERPKHNGESGDEREKADAFIDEGCENMD 601
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV 237
VYVG+L + EL+ FS YG + V + G+AF+
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFI 655
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,620,610
Number of Sequences: 59808
Number of extensions: 385381
Number of successful extensions: 1152
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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