Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10997
(788 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 68 7e-12
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 68 7e-12
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 68 7e-12
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 46 2e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 46 2e-05
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 39 0.004
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 36 0.044
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 35 0.058
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 35 0.058
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 35 0.058
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 35 0.058
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 35 0.058
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 35 0.058
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 35 0.076
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.10
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 34 0.10
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 34 0.10
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 34 0.10
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 34 0.10
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.10
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 34 0.10
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 34 0.10
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 34 0.13
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 33 0.18
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 32 0.54
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 32 0.54
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 31 0.71
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.71
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 0.71
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 0.71
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 31 0.71
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 31 0.94
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.94
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.94
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.94
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.2
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.2
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 30 2.2
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 2.2
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 29 2.9
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 29 2.9
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 2.9
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 29 2.9
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 29 2.9
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 2.9
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 2.9
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81034-5|CAB02730.1| 198|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.8
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 3.8
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 29 3.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 29 3.8
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 5.0
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 5.0
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 5.0
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 5.0
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 28 8.8
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 28 8.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFAFVE++D R
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAVR LDG ICG RARVE+S
Sbjct: 51 DAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFAFVE++D R
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAVR LDG ICG RARVE+S
Sbjct: 51 DAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/49 (59%), Positives = 37/49 (75%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFAFVE++D R
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAVR LDG ICG RARVE+S
Sbjct: 51 DAEDAVRALDGSRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPGFAFVEFEDPR 255
D KVYVG+L + + E+ED F YG ++ V + + P FAFVEFED R
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHR 57
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAVR DG GRR RVE +
Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPGFAFVEFEDPR 255
D KVYVG+L + + E+ED F YG ++ V + + P FAFVEFED R
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHR 57
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMS 326
DAEDAVR DG GRR RVE +
Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFT 81
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 11/55 (20%)
Frame = +1
Query: 115 KVYVGDLGNNASKPEL-----------EDAFSYYGPLRNVWVARNPPGFAFVEFE 246
+VYVG++ +A++ EL E FS GP++++W+A+ PPGFAFV F+
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFK 72
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+VY+G L N AS ++E F YG L +V + +N GF FV+F+D R
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQR 46
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVE 320
DA+DAV L+G+ +CG R +E
Sbjct: 47 DADDAVHDLNGKELCGERVILE 68
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G L + S+ ++E F YG +R+V + +N GF FVEF+D R
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKR 47
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G L + S+ ++E F YG +R+V + +N GF FVEF+D R
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKR 47
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G L + S+ ++E F YG +R+V + +N GF FVEF+D R
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKR 47
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.5 bits (78), Expect = 0.044
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG RGHY+RDC
Sbjct: 69 CYNCGGRGHYSRDC 82
Score = 29.5 bits (63), Expect = 2.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+C + GH++RDC
Sbjct: 37 CYNCQETGHFSRDC 50
Score = 27.9 bits (59), Expect = 8.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG GH +R+C
Sbjct: 109 CYNCGRSGHISREC 122
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAFVEFEDPRMLKTQYVVW 282
K+++G L N ++ ++++ +GPL+ NV N G+AF E+ DP L Q +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP-TLTDQAIAG 350
Query: 283 MDG 291
++G
Sbjct: 351 LNG 353
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 106 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
G C+++VG+L N + EL++ FS +G + +++ GFAF+ +
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLD 158
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 35.1 bits (77), Expect = 0.058
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 106 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
G C+++VG+L N + EL++ FS +G + +++ GFAF+ +
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLD 158
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAFVEFEDPRMLKTQYVVW 282
K+++G L N ++ ++++ +GPL+ NV N G+AF E+ DP L Q +
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP-TLTDQAIAG 350
Query: 283 MDG 291
++G
Sbjct: 351 LNG 353
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAFVEFEDPRMLKTQYVVW 282
K+++G L N ++ ++++ +GPL+ NV N G+AF E+ DP L Q +
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP-TLTDQAIAG 325
Query: 283 MDG 291
++G
Sbjct: 326 LNG 328
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAFVEFEDPRMLKTQYVVW 282
K+++G L N ++ ++++ +GPL+ NV N G+AF E+ DP L Q +
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDP-TLTDQAIAG 328
Query: 283 MDG 291
++G
Sbjct: 329 LNG 331
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/76 (26%), Positives = 42/76 (55%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
LT ++ ++ ++ + VYVG++ + +L D FS YG + V + + +AFV +E
Sbjct: 223 LTFEQVFNS-TKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYE 280
Query: 247 DPRMLKTQYVVWMDGR 294
+ T+ ++ M+G+
Sbjct: 281 -KKECATKAIMEMNGK 295
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 103 YGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDP 252
Y +Y+GDL + S+ L + FS GP+ ++ V R+ G+A+V F+ P
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN--PPGFAFVEFEDPRML 261
+ RY +YV ++ + + L D FS +G + + V V N GF FV FE P
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEE- 395
Query: 262 KTQYVVWMDGRFAVVEPV 315
T V M+ + +P+
Sbjct: 396 ATAAVTDMNSKMIGAKPL 413
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 34.3 bits (75), Expect = 0.10
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 103 YGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDP 252
Y +Y+GDL + S+ L + FS GP+ ++ V R+ G+A+V F+ P
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN--PPGFAFVEFEDPRML 261
+ RY +YV ++ + + L D FS +G + + V V N GF FV FE P
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEE- 395
Query: 262 KTQYVVWMDGRFAVVEPV 315
T V M+ + +P+
Sbjct: 396 ATAAVTDMNSKMIGAKPL 413
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G + NA + ++E YG + N+ + GFAFV+FED R
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSR 46
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G + NA + ++E YG + N+ + GFAFV+FED R
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSR 46
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++Y+G + NA + ++E YG + N+ + GFAFV+FED R
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSR 46
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 85 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 249
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A+V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 250 P 252
P
Sbjct: 83 P 83
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +1
Query: 106 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFV 237
G C+++VG+L N + EL++ FS +G + +++ GFAF+
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFL 155
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 85 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 249
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A+V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 250 P 252
P
Sbjct: 83 P 83
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 85 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFED 249
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A+V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 250 P 252
P
Sbjct: 83 P 83
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAFVEFEDPRMLKTQYV--- 276
++VG + S+ +L F YG ++ + + A P G+AF+E+ D + T Y
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 277 -VWMDGRFAVVE 309
+ +DG+ VV+
Sbjct: 166 GIKVDGKRLVVD 177
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFEDPRMLKTQY 273
D +V+ GDLGN S L AF Y + V R G+ FV F D +
Sbjct: 202 DFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDY-VRA 260
Query: 274 VVWMDGRFAVVEPV 315
+ MDG++ P+
Sbjct: 261 MREMDGKYVGNRPI 274
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 31.9 bits (69), Expect = 0.54
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 106 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFED 249
G VYVG+ ++ EL + FS G + NV + + P GFAF+EF +
Sbjct: 3 GIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAE 55
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
++ +L ++A+ LE F+ + L+++ + N PG AFVEF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDP 252
K+++G L + L D F +G + V R+P GF F+ F DP
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDP 252
++YVG + + L AF +GP++++ ++ +P FAFVE+E P
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVP 153
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDP 252
++YVG + + L AF +GP++++ ++ +P FAFVE+E P
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVP 153
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEFEDP 252
++YVG + + L AF +GP++++ ++ +P FAFVE+E P
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVP 153
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFEDP 252
K+++G L + L D F +G + V R+P GF F+ F DP
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDP 96
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFED 249
VYVG++ ++ E+ + F+ G + NV + + P GFAFVEF +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSE 56
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEF 243
K+++G L ++ + +L + FS +GP+ + V R+P GF FV F
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEF 243
K+++G L ++ + +L + FS +GP+ + V R+P GF FV F
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEF 243
K+++G L ++ + +L + FS +GP+ + V R+P GF FV F
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG++GHYA C
Sbjct: 252 CYKCGEKGHYANRC 265
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 243
K++VG L +N + + + +S +G + ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 243
K++VG L +N + + + +S +G + ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEF 243
K++VG L +N + + + +S +G + ++ V R+P GF FV F
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 753 IYINSMWFQSICWTYNFSSI 694
IY +S+WFQ C T++F+SI
Sbjct: 245 IYPDSIWFQFFCLTFSFASI 264
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFED 249
VYVG++ A+ E+E F G + V + + +P GFA+VEF +
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTE 128
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 124 VGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 246
V +L ++ EL D F G + +++AR+ P GFAFV FE
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFE 225
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNV 201
+V + +L N K LE+ FS YG ++NV
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNV 162
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFED 249
VYVG+ ++ +L + FS G + NV + + P GFAFVEF +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTE 54
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 611 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 656
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 198
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 441 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 316
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>Z81034-5|CAB02730.1| 198|Caenorhabditis elegans Hypothetical
protein C15C6.4 protein.
Length = 198
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 133 LGNNASKPELEDAF---SYYGPLRNVWVARNPPGFAFVEFEDPRMLKTQYVVWMDGRFAV 303
LGN+ S ++E Y+G L +W+A NP T +V + RF V
Sbjct: 80 LGNHFSSTKIEKTILKSDYHGALLTIWLAENPTQIGISGIVVLETRHTFQMVTQEDRFVV 139
Query: 304 V 306
+
Sbjct: 140 I 140
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEF 243
A + R D +YVG L S+ L + GP+ +V V N GF FVEF
Sbjct: 3 AGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEF 243
A + R D +YVG L S+ L + GP+ +V V N GF FVEF
Sbjct: 13 AGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 71
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPR 255
+Y+G L S+ ++ FS YG + N+ + R+ GFAF+ ++D R
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQR 90
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 441 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 316
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 70 TIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAF 234
TI++ + D K++VG + + +L F+ YG + V + GFAF
Sbjct: 15 TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
Query: 235 VEF 243
VEF
Sbjct: 75 VEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 70 TIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAF 234
TI++ + D K++VG + + +L F+ YG + V + GFAF
Sbjct: 15 TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
Query: 235 VEF 243
VEF
Sbjct: 75 VEF 77
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 79 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV---ARNPPGFAFVEFED 249
+++S+ S G +++V ++ +P+L F GP+ +V + R GF FV ++
Sbjct: 89 RSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQN 148
Query: 250 P 252
P
Sbjct: 149 P 149
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 79 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV---ARNPPGFAFVEFED 249
+++S+ S G +++V ++ +P+L F GP+ +V + R GF FV ++
Sbjct: 89 RSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQN 148
Query: 250 P 252
P
Sbjct: 149 P 149
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG RGH A +C
Sbjct: 411 CYYCGKRGHTANEC 424
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFED 249
+VY+G N AS + E F YG L + + +N G +F+D
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQD 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,152
Number of Sequences: 27780
Number of extensions: 295547
Number of successful extensions: 880
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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