Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10997
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 264 LQHPWIFEFNKCEAWR 217
           L++ W+F  + C+ WR
Sbjct: 108 LENRWLFTTDWCDVWR 123


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 253 VDLRIQQMRSLEDF 212
           +DLR +Q++SLED+
Sbjct: 371 IDLRKKQLKSLEDW 384


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 564  VPSNGNESVSESGCGIEIQPWRAGIRYAC 478
            VP+N   +   S  G  ++PWR     AC
Sbjct: 1307 VPTNRVPARITSFGGHVVRPWRGSATLAC 1335


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 564  VPSNGNESVSESGCGIEIQPWRAGIRYAC 478
            VP+N   +   S  G  ++PWR     AC
Sbjct: 1303 VPTNRVPARITSFGGHVVRPWRGSATLAC 1331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,226
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)