Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10997
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 2e-11
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 66 2e-11
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 66 3e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 63 2e-10
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 53 2e-07
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 50 1e-06
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 50 1e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 9e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 47 2e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 37 0.013
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 37 0.018
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 36 0.023
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 36 0.031
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 36 0.040
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 36 0.040
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.040
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 35 0.054
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.071
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 34 0.094
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 34 0.12
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 33 0.16
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 33 0.16
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 33 0.16
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 33 0.16
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.16
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 33 0.16
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 33 0.22
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.22
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 33 0.22
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.29
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.29
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 0.38
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.38
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.38
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 32 0.38
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.50
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 32 0.50
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 32 0.50
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 32 0.50
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 32 0.50
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 32 0.50
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.66
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 31 0.66
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 31 0.66
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.66
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 31 0.66
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.66
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.87
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 1.2
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.5
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.5
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 30 1.5
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 1.5
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 30 1.5
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 30 2.0
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 30 2.0
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 30 2.0
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 30 2.0
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 29 2.7
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.7
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 2.7
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 29 2.7
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 2.7
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 29 2.7
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 29 2.7
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 29 3.5
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 3.5
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 29 3.5
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 29 4.6
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 4.6
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 4.6
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 4.6
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 4.6
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 4.6
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 28 6.1
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 28 6.1
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 28 6.1
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 28 6.1
At2g06904.1 68415.m00778 hypothetical protein 28 6.1
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 28 6.1
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 28 6.1
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 28 8.1
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 28 8.1
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 28 8.1
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 28 8.1
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 28 8.1
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 28 8.1
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+VYVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D R
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDER 49
Score = 32.3 bits (70), Expect = 0.38
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH+AR+C
Sbjct: 91 CYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+VYVG+L ++ ELED F +G LRNVWVAR PPG+AF+EF+D R
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDER 49
Score = 32.3 bits (70), Expect = 0.38
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH+AR+C
Sbjct: 91 CYECGELGHFAREC 104
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 66.1 bits (154), Expect = 3e-11
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+VYVG+L ++ ELED F +G +R+VWVAR PPG+AF++FEDPR
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPR 49
Score = 32.7 bits (71), Expect = 0.29
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH+AR+C
Sbjct: 101 CYECGETGHFAREC 114
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
+VYVG+L ++ ELED F +G +R+VWVAR PPG+AF++FED R
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSR 49
Score = 32.7 bits (71), Expect = 0.29
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH+AR+C
Sbjct: 98 CYECGESGHFAREC 111
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS + +YVG+L + K E+ED F YGP+ ++ + PPG+AFVEFEDPR
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPR 56
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS +YVG+L + + E+ED FS YGP+ + + PPG+AFVEFED R
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDAR 56
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS +YVG+L + + E+ED FS YGP+ + + PPG+AFVEFED R
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDAR 56
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS VYVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSN 329
DAEDA+ G DG G R RVE+++
Sbjct: 57 DAEDAIHGRDGYDFDGHRLRVELAH 81
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS VYVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSN 329
DAEDA+ G DG G R RVE+++
Sbjct: 57 DAEDAIHGRDGYDFDGHRLRVELAH 81
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
MS VYVG+L + + E+ED FS YGP+ + V PPG+AFVEF+D R
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDAR 56
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSN 329
DAEDA+ G DG G R RVE+++
Sbjct: 57 DAEDAIHGRDGYDFDGHRLRVELAH 81
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +1
Query: 100 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPR
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPR 55
Score = 35.1 bits (77), Expect = 0.054
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DA+DA LDGR G R VE S C++CG GH+A
Sbjct: 56 DADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGR----CFNCGVDGHWA 111
Query: 435 RDC 443
RDC
Sbjct: 112 RDC 114
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+RGH R+C
Sbjct: 123 CYRCGERGHIERNC 136
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +1
Query: 100 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
RYG+ ++YVG L + +LE FS YG +R+V + R+ +AFVEF DPR
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPR 55
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DA+DA LDGR G R VE S C++CG GH+A
Sbjct: 56 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGR----CFNCGVDGHWA 111
Query: 435 RDC 443
RDC
Sbjct: 112 RDC 114
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+RGH R+C
Sbjct: 123 CYRCGERGHIERNC 136
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNV--WVARNPPGFAFVEFEDPR 255
+YVG+L + + E+ED F YG + ++ V PP + FVEFE R
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSR 56
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSN 329
DAEDA++G DG + G R RVE+++
Sbjct: 57 DAEDAIKGRDGYNLDGCRLRVELAH 81
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/88 (27%), Positives = 30/88 (34%)
Frame = +3
Query: 180 LWSTEECVGCKKXXXXXXXXXXXXTDAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXX 359
+W C+ DA+DA LDGR G R VE S
Sbjct: 1 MWENTPCMWSLLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFD 60
Query: 360 XXXXXXXXXXXXXXCYDCGDRGHYARDC 443
C++CG GH+ARDC
Sbjct: 61 SRGPPPGAGR----CFNCGVDGHWARDC 84
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+RGH R+C
Sbjct: 93 CYRCGERGHIERNC 106
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DA+DA LDGR G R VE S C++CG GH+A
Sbjct: 15 DADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRGPPPGAGR----CFNCGVDGHWA 70
Query: 435 RDC 443
RDC
Sbjct: 71 RDC 73
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRM 258
+Y+G + + + E+E FS +G ++ V VARN F F++FEDP +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 35.5 bits (78), Expect = 0.040
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CGD GH+ARDC
Sbjct: 134 CYNCGDTGHFARDC 147
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CGD GH+ARDC
Sbjct: 200 CYTCGDVGHFARDC 213
Score = 32.3 bits (70), Expect = 0.38
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CGD GH ARDC
Sbjct: 166 CYTCGDVGHVARDC 179
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH ARDC
Sbjct: 255 CYQCGGSGHLARDC 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+AR+C
Sbjct: 282 CYKCGKEGHFAREC 295
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH ARDC
Sbjct: 232 CYSCGGVGHIARDC 245
Score = 29.5 bits (63), Expect = 2.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG+ GH ++DC
Sbjct: 102 CYNCGELGHISKDC 115
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.5 bits (78), Expect = 0.040
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +1
Query: 157 ELEDAFSYYGPLRNVWVARN-----PPGFAFVEFED 249
EL + F +GP+R+V++ R+ P GFAFVEF D
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 35.5 bits (78), Expect = 0.040
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFED 249
A+ + + + +YVGDL + ++ L D F+ P+ N+ V R+ G+A+V F +
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFAN 94
Query: 250 P 252
P
Sbjct: 95 P 95
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 35.1 bits (77), Expect = 0.054
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DA+DA LDGR G R VE S C++CG GH+A
Sbjct: 15 DADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGR----CFNCGVDGHWA 70
Query: 435 RDC 443
RDC
Sbjct: 71 RDC 73
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+RGH R+C
Sbjct: 82 CYRCGERGHIERNC 95
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.071
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +1
Query: 76 QKASSTMSRYG--DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAF 234
Q S+T+ G D K+YVG+L N S+ +L F +GP+ V + +P GF F
Sbjct: 251 QSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGF 310
Query: 235 VEF 243
++F
Sbjct: 311 IQF 313
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 151 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFE 246
+ ++ D S YGP+ +++V +N GF ++ F+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQ 489
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Frame = +1
Query: 124 VGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP 252
V +L ++ + +L +F +GP++++++ R+ P GF FV+F DP
Sbjct: 40 VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 76 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEF 243
Q+ ST ++ VYV +L + + +L++AF YG + + V ++ GF FV F
Sbjct: 17 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 76
Query: 244 ED 249
E+
Sbjct: 77 EN 78
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +1
Query: 76 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAFVEF 243
Q ++ +YV +L + S +L++ FS +G + + V R+P G FV F
Sbjct: 120 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAF 179
Query: 244 EDPRMLKTQYVVWMDGRFAVVEPV 315
P T+ + + G+ +P+
Sbjct: 180 ATPEE-ATEAMSQLSGKMIESKPL 202
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNV 201
K++VG+L KPE E+ F +GP+ NV
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENV 194
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH+ARDC
Sbjct: 185 CYSCGESGHFARDC 198
Score = 31.1 bits (67), Expect = 0.87
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH ARDC
Sbjct: 131 CYKCGEPGHMARDC 144
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAF 234
L ++ A + R + K++VG L N S+ E++ FS YG ++++ + R G AF
Sbjct: 92 LQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAF 150
Query: 235 VEFE 246
+++E
Sbjct: 151 LKYE 154
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR----NPPGFAF 234
L ++ A + R + K++VG L N S+ E++ FS YG ++++ + R G AF
Sbjct: 92 LQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAF 150
Query: 235 VEFE 246
+++E
Sbjct: 151 LKYE 154
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRMLKTQY 273
++V L +S+ +++ F YGP++ V + + P G+AF+E+ R +K Y
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAY 196
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 33.5 bits (73), Expect = 0.16
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH+ARDC
Sbjct: 182 CYSCGESGHFARDC 195
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG+ GH AR+C
Sbjct: 138 CFKCGEPGHMAREC 151
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +1
Query: 106 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEF 243
G + + +L +A +L D+F +GPL+++++ RN P GF FV++
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRML 261
K++VG + + +L + F+ YG + V R+ P GF FV F DP +L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFE 246
K++VG L + E F YGP+ +V + P GF FV F+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFD 159
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CGD GH+ARDC
Sbjct: 132 CYMCGDVGHFARDC 145
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+CG GH ARDC
Sbjct: 254 CYECGGTGHLARDC 267
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+ARDC
Sbjct: 198 CYMCGGVGHFARDC 211
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH A+DC
Sbjct: 163 CYSCGEVGHLAKDC 176
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C++CG+ GH A+DC
Sbjct: 96 CFNCGEVGHMAKDC 109
Score = 28.3 bits (60), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH+AR+C
Sbjct: 284 CFICGKEGHFAREC 297
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Frame = +1
Query: 124 VGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP 252
V +L ++ + +L F +GP++++++ R+ P GF F++F DP
Sbjct: 41 VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAFVEFEDP----RMLKT 267
K+YV L ++ L D F +G L ++ VA P GFAF+ +E + ++
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 268 QYVVWMDGRFAVVE 309
+ ++DGR VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAFVEFEDP 252
VYV +L + EL+ F YG + + V R+ G F FV FE+P
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENP 275
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLR--NVWVARN---PPGFAFVEFEDPR 255
+ +++VG L + ++ +LE F YG + + V R+ P GF F+ F D R
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLR--NVWVARN---PPGFAFVEFEDPR 255
+ +++VG L + ++ +LE F YG + + V R+ P GF F+ F D R
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----FVEFEDPRMLKTQYVVWM 285
+YV +L + + +L + F+ +G + + V R+P G + FV F P T+ + M
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEE-ATRAITEM 387
Query: 286 DGRFAVVEPV 315
+G+ V +P+
Sbjct: 388 NGKMIVTKPL 397
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAFVEFE 246
A++ ++ G +YVGDL + +L +AF+ G + +V V R+ G+ +V +
Sbjct: 35 AAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYA 94
Query: 247 DPR 255
P+
Sbjct: 95 TPQ 97
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA--RNPPGFAFVE 240
++++K+++ + + +YV +L N + E+ D F YG +R + + + G AFV
Sbjct: 4 ISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVV 63
Query: 241 FED 249
+ED
Sbjct: 64 YED 66
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.9 bits (69), Expect = 0.50
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +1
Query: 49 NALKY*LTIQKASSTMSRY-GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN--- 216
NA + L I +S ++Y VYVG + + ++ +L FS YG + +V + R+
Sbjct: 14 NARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGT 73
Query: 217 --PPGFAFVEFEDPR 255
GFAF+ +ED R
Sbjct: 74 GKSKGFAFLAYEDQR 88
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+ARDC
Sbjct: 239 CYKCGKEGHWARDC 252
Score = 31.1 bits (67), Expect = 0.87
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG +GH++RDC
Sbjct: 306 CYKCGKQGHWSRDC 319
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH++RDC
Sbjct: 342 CYKCGKAGHWSRDC 355
Score = 28.3 bits (60), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH++RDC
Sbjct: 270 CFKCGKPGHWSRDC 283
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 97 SRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG-----FAFVEFEDP 252
SR+G +YVGDL + ++ +L D FS P+ +V + RN +A++ F+ P
Sbjct: 18 SRFGS--LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSP 72
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
VYVG+ + +LE FS +G ++ V + G+AFV FED R
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDER 46
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRML 261
K+++G + + + L + FS +G + V V R P GF FV F DP ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAFVEFE 246
K++VG L + E F YGP+ + + + P GF FV F+
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFD 159
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 94 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFE 246
MS +C VY+G++ S L D G + ++ + R+ P GFAF E+E
Sbjct: 1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYE 56
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 31.5 bits (68), Expect = 0.66
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG+ GH+AR+C
Sbjct: 327 CYRCGEEGHFAREC 340
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLR-NVWVARNPPGFAFVEFEDPRMLKTQYVVWMDGR 294
VYVG++ ++P L++ F+ GP+ + + ++ + FV + D R ++ ++GR
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALA-ILSLNGR 119
Query: 295 FAVVEPV 315
+P+
Sbjct: 120 HLFGQPI 126
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 76 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVE 240
+K S + V V L + + +LE+AFS GP+R ++ N GFAFV+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 241 F 243
F
Sbjct: 68 F 68
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 103 YGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEF 243
Y K++VG + S+ L+ FS YG + VA+ P GF FV F
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 67 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR 213
L ++ A + R + K++VG L N S+ E++ FS YG ++++ + R
Sbjct: 86 LQVKYADGELERL-EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRMLK 264
++V +L ++ S EL FS YG +R V + ++EF D R K
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAK 345
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR 213
K++VG L N S+ E++ FS YG ++++ + R
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 112 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRM 258
CK+++G + S+ L D F +G + + ++ GF FV F DP +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNV 59
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 112 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRM 258
CK+++G + S+ L D F +G + + ++ GF FV F DP +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNV 59
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +3
Query: 255 DAEDAVRGLDGRTICGRRARVEMSNXXXXXXXXXXXXXXXXXXXXXXXXCYDCGDRGHYA 434
DA A R +D + + GR+ V ++ CY+CGD GH +
Sbjct: 110 DAAKAARSMDAKILNGRKLTVSIA-----ADNGRASEFIKKRVYKDKSRCYECGDEGHLS 164
Query: 435 RDC 443
+C
Sbjct: 165 YEC 167
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFED 249
K+++G L + + L+DAFS +G + V +A + GF FV+F +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAFVEF 243
+++VG L AS+ +L+ F + G + V + +NP G AF+ F
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRF 262
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP----RMLKT 267
K+++G + + + L D FS YG + + R+ GF F+ F DP R++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 268 QYVVWMDGR 294
++++ DGR
Sbjct: 67 KHII--DGR 73
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP----RMLKT 267
K+++G + + + L D FS YG + + R+ GF F+ F DP R++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 268 QYVVWMDGR 294
++++ DGR
Sbjct: 67 KHII--DGR 73
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP----RMLKT 267
K+++G + + + L D FS YG + + R+ GF F+ F DP R++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 268 QYVVWMDGR 294
++++ DGR
Sbjct: 67 KHII--DGR 73
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNV-WVARNPPGFAFVEFEDPRMLKTQYVVWMDGR 294
VYVG++ ++P L++ F+ GP+ + + + + FV + D R ++ ++GR
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLA-ILSLNGR 114
Query: 295 FAVVEPV 315
+P+
Sbjct: 115 HLFGQPI 121
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY+C +GH ARDC
Sbjct: 197 CYECKGKGHIARDC 210
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRML 261
K+++G L + + F YG + + + R+ P GF F+ F DP ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRML 261
K+++G L + + F YG + + + R+ P GF F+ F DP ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 109 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRMLKTQY 273
D +++ GDLGN + L AF+ + V R+ G+ FV F +P L
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA- 194
Query: 274 VVWMDGRFAVVEPV 315
+ M+G++ P+
Sbjct: 195 LKEMNGKYVGNRPI 208
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 82 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAFVEFE 246
+ ST G +++VG L ++ ++ + +GPLR + + N G+AF ++
Sbjct: 365 SGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424
Query: 247 DP 252
DP
Sbjct: 425 DP 426
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++V ++ +N EL F YG +R ++ GF + + D R
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIR 215
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
++V ++ +N EL F YG +R ++ GF + + D R
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIR 215
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +1
Query: 100 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEF 243
RY K+Y+G L + L+DAFS + + V N G+ FV F
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 73 IQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP--GFAFVEFE 246
IQ+ T S + V++ L + + +EDA +GP+ + + ++ P FAFV+FE
Sbjct: 734 IQEEEGTESH--EASVFLKRLPLDVTFALIEDALKKFGPINAISIIKSGPLYKFAFVDFE 791
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
CY CG GH+AR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH+ARDC
Sbjct: 128 CFKCGRVGHWARDC 141
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN---PPGFAFVEFEDPRML 261
+++VG L + +LE AFS +G + + + + R+ GF F+ F D R +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAM 61
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDP----RMLKT 267
K+++G + + + L++ F YG L + R+ GF F+ F DP R++
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 268 QYVVWMDGR 294
++++ DGR
Sbjct: 76 KHII--DGR 82
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 124 VGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
V +L + S +LE+ F YG ++ + N FVEF D R
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVR 269
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPR 255
V+VG+ + +LE F YG + V + G+AFV FED R
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDER 46
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 151 KPELEDAFSYYGPLRNVWVARNPPGFAFVEFED 249
K ++++ S +G L +++V +N GF ++ FE+
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFEN 520
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +1
Query: 70 TIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA-------RNPPGF 228
+I+K + ++V +L NA P+L + F +GP++ + NP F
Sbjct: 266 SIKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCF 325
Query: 229 AFVEFE 246
F+ FE
Sbjct: 326 GFISFE 331
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAFVEFEDPRMLKTQYVV 279
+VYVG+L + L +AFS YG + + V R+ GF FV + + V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA-VS 62
Query: 280 WMDGR 294
MDG+
Sbjct: 63 GMDGK 67
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 252 TDAEDAVRGLDGRTICGRRARVEM 323
++AE AV G+DG+ + GRR V++
Sbjct: 55 SEAEAAVSGMDGKELNGRRVSVKL 78
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPL--RNVWVAR---NPPGFAFVEFEDPRMLKTQYVV 279
K+++G L L DAF+++G + V V R GF FV F D T +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND-EGAATAAIS 94
Query: 280 WMDGR 294
MDG+
Sbjct: 95 EMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +1
Query: 115 KVYVGDLGNNASKPELEDAFSYYGPL--RNVWVAR---NPPGFAFVEFEDPRMLKTQYVV 279
K+++G L L DAF+++G + V V R GF FV F D T +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFND-EGAATAAIS 94
Query: 280 WMDGR 294
MDG+
Sbjct: 95 EMDGK 99
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 28.3 bits (60), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH+AR+C
Sbjct: 120 CFKCGKPGHFAREC 133
>At2g06904.1 68415.m00778 hypothetical protein
Length = 217
Score = 28.3 bits (60), Expect = 6.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG+ GHY +DC
Sbjct: 177 CFICGEDGHYPQDC 190
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH ARDC
Sbjct: 114 CHSCGKSGHRARDC 127
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 CKVYVGDLG-NNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFED 249
C V V +L ++ + +L + FS YG + + + RN P A V+ D
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGD 291
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 118 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAFVEFEDPRMLKTQYVV 279
+YVG++ + E++ F G + V + + P GFA+VEF + ++ ++
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLIL 162
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C++CGD H AR+C
Sbjct: 88 CFNCGDMNHLARNC 101
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 402 CYDCGDRGHYARDC 443
C+ CG GH++RDC
Sbjct: 8 CFKCGRPGHWSRDC 21
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 100 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN 216
R D VYVG L S+ L + F GP+ NV+V ++
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKD 59
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -3
Query: 348 CHNRDPH*TFLHGLYDRKSSVHPNHVLRLQHPWIFEFNKCE 226
CHNR F G Y R ++ + NH R H IF +CE
Sbjct: 559 CHNRCTGLIFYEG-YRRNATYYYNHSNRSTHRMIFCSLECE 598
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 326 RHFYTGSTTANRPSIQTTYCVFSIRGSSNSTNAK 225
R TGSTT P+++ T V S RG+S S K
Sbjct: 211 RRMSTGSTTMASPAVRGTSPVSSSRGNSPSPKIK 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,191
Number of Sequences: 28952
Number of extensions: 280774
Number of successful extensions: 932
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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