Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10995
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   0.43 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   3.0  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   4.0  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.0  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   5.3  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   9.3  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    24   9.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   9.3  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   9.3  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 346 IY*KFKCILIPNKTEKVRSWSDVENG*CLASLMAWGLPWQQQ 221
           +Y KF+ IL+ NK  + +  +++ N      L AW  P+ Q+
Sbjct: 415 VYKKFQSILMKNKDSRSKLMTEIINNIRSIKLYAWETPFLQK 456


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 81  WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 188
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -1

Query: 166 QRLCFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAP 29
           +++ FL L PLS    ++  +  ++P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 106 MESTDPQCHILQHRRPRLPLMQLEAPCSF 20
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 263 TSPVLDIAPGSDLFCFIWN*NA 328
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 363 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 268
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +3

Query: 60  GRRCCNIWHWGSVDSISGSRARFQLSGNSG 149
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 115 EPLMESTDPQCHILQHRRPRLPLMQL-EAPCSF 20
           +P   +TD Q ++ +H  PRLP   + + P SF
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLPEGSINDYPSSF 538


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 60  GRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSR 164
           G R C    W S+D +S S A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 24  EHGASSCISGKRGRRCCNIWHWGS 95
           E  A +C  G  G  C  +W+W +
Sbjct: 398 EAAALACSGGSDGVTCGYMWYWNN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,157
Number of Sequences: 5004
Number of extensions: 25639
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)