Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10995
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               28   2.2  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.2  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   2.9  
SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.9  
SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)              27   6.8  
SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               27   6.8  

>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 81  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR---KFSGRQ-HCVTVDCCCHGSPHA 248
           + W  VDSI+ S+A+F  S  +   H    T  LR    F  +Q   V +D  C+ +  A
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLRFHGHFGFQQADRVVLDALCYRN-IA 323

Query: 249 MRDAKHHP 272
           +   + HP
Sbjct: 324 IEAVEKHP 331


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 69  CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 188
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  WHWGSVDSISGSRARFQLSGNSGRKHSR 164
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_8211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -1

Query: 157 CFLPLFPLS*NRAREPLMESTDPQCHILQHRRPRLPLMQLEAPCSFNFSSLS 2
           C LPLFP     +R  +  +  P          R+PL     PC   +SS+S
Sbjct: 269 CTLPLFPHVQTYSRISIGPNVFPSVQTYSRVSKRIPLCPNVFPCVQTYSSMS 320


>SB_56570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
 Frame = +3

Query: 66  RCC---NIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRQHCVTVDCCCHG 236
           +CC   N  HW         RA F   G S  +     T + R    + +C+ +  CC  
Sbjct: 175 KCCKPANHPHWYGHCYDQNVRASFDKEGTSKCRDGYFMTGLYRGNCDQIYCIEMFKCCKM 234

Query: 237 SPHAMRDAKHHPFSTSLQDRTFSVLFGIKMHLNF 338
            P   +        T + D T + L  +  +L +
Sbjct: 235 VPTPPKMQSLDDVKTRVMDETMAELALLAHYLGY 268


>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 991

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 355 HRQIY*KFKCILIPNKTEKVRSWSDVENG*CLASLMAWGLPW 230
           H ++Y      LI +K EKV  ++ +E   C+     W L W
Sbjct: 167 HSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNW 208


>SB_37647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 299 GPILERCRERVMFSIPHGVGATMAAAVN 216
           GPI+  CR R  F I   +G+T+   +N
Sbjct: 92  GPIINYCRNRFTFHIWAIIGSTVLGRIN 119


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 355 HRQIY*KFKCILIPNKTEKVRSWSDVENG*CLASLMAWGLPW 230
           H ++Y      LI +K EKV  ++ +E   C+     W L W
Sbjct: 184 HSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNW 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,225
Number of Sequences: 59808
Number of extensions: 221162
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)