Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10995
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    30   0.60 
At4g15840.1 68417.m02409 expressed protein                             29   0.79 
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    28   1.8  
At5g07790.1 68418.m00892 expressed protein                             27   4.2  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    26   9.7  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    26   9.7  

>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 168 CTSILRKFSGRQHCV----TVDCCCHGSPHAMRDAKHH---PFSTSLQDRTFS 305
           C SI +KF     C+     +   C G PH +R ++HH    F++SL   TFS
Sbjct: 203 CASI-KKFDPTYICIQCVFAIHKDCRGFPHVIRISRHHHRISFTSSLLSGTFS 254


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 105 ISGSRARFQLSGNSGRKHSRCCTSILRKFSG 197
           +SGS   FQ S NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 12  LKLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 113
           +K+ EH ASS       R   N W  GSV  ISG
Sbjct: 424 MKMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 36  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSI 179
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSL 457


>At5g11040.1 68418.m01290 expressed protein weak similarity to
           hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 81  WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSG 197
           WH G  DS +   +    +GN+GR       S+L  ++G
Sbjct: 773 WHVGPTDSDNTMSSGRNAAGNTGRPKDGTSPSLLIHYAG 811


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 15  KLKEH-GASSCISGKRGR 65
           KLK+H  A+SC  G+RGR
Sbjct: 610 KLKQHLNANSCFKGERGR 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,781,427
Number of Sequences: 28952
Number of extensions: 146760
Number of successful extensions: 322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)