Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10993
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 126 3e-30
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 126 3e-30
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 126 3e-30
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 31 0.12
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 28 0.84
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 1.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.5
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 5.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 7.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.8
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 126 bits (303), Expect = 3e-30
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T RG+ AL L+ +G PPPF
Sbjct: 93 TARGQAALEHLQAVEGIPPPF 113
Score = 65.7 bits (153), Expect = 5e-12
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 474
LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A K + +
Sbjct: 130 LKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAKAASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 126 bits (303), Expect = 3e-30
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T RG AL+ L+ +G PPPF
Sbjct: 93 TTRGNIALKNLQALEGIPPPF 113
Score = 57.2 bits (132), Expect = 2e-09
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 402
LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 130 LKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 126 bits (303), Expect = 3e-30
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVVVVRCE++NISG+FFRNKLK +++LRK C NP+RG FHFRAPS+I K VRGM+PHK
Sbjct: 33 KVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHK 92
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T RG+ AL L+ +G PPPF
Sbjct: 93 TARGQAALEHLQAVEGIPPPF 113
Score = 65.3 bits (152), Expect = 6e-12
Identities = 31/56 (55%), Positives = 38/56 (67%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 462
LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A K
Sbjct: 130 LKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIASAK 183
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 391 KGKAVKRVAYEKKLKRITKDAGEKVSKATTP 483
KGK V R+ Y+ K + D+GE+++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 328 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 462
R S E K D K E+KR+ K K+ EKK K+ K+ +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 370 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFT 489
R + KR+ K +R+AYE+ LKR K EK +K++ T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 216 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 130
S L AFLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 237 GHPSYVRSLLRAFLPRSVLCGIIP 166
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 501 LDDGSEWCCRLRHLLTSILGDPLKFLFIGNSLNSL 397
L D E R+RH S++G+P+ + +I ++ L
Sbjct: 408 LPDRYEEASRVRHCALSLVGEPIFYPYINEFVSML 442
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 59 NKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 175
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 367 VRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYDT 513
V++L+D KGKA K A KK KR D +K+ + T + +S T
Sbjct: 1100 VQELDDSSKGKAGKMPA-SKKNKRQKGDV-KKIDETKNEATDMEESLTT 1146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,815
Number of Sequences: 5004
Number of extensions: 48827
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -