Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10993
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)                 29   2.0  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)                 29   3.5  
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)                   29   3.5  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   4.7  
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)                    28   6.2  
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)              28   6.2  
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +2

Query: 170 MIPHKTERGKNALRRLRTYDGCPPPF 247
           MIPHKT++G  A+ R++ +DG PPP+
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPY 26


>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
          Length = 1266

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 301  PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 474
            PG   C VG+L H   W    + R L   R+  + ++ A   +     + +G+  S++
Sbjct: 866  PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 335  PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 463
            P K +GNT    V ++  GR + L  R +P++ N  G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156


>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
          Length = 622

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 301 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 417
           PG   C VG+L H   W    + R L   R+  + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445


>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
          Length = 271

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +1

Query: 292 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 456
           C KPG+++ HV  +    H    ++ D  R +  +   K  A+K  +Y  KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 153 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 10
           H +   AL+W+G R  FTL +   + + LS  + K  + + C   ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577


>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
          Length = 443

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349 WKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTP 483
           W+ R  V++  E K+K +  + +A  KK+K+  K +  + SK + P
Sbjct: 378 WRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVP 423


>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
          Length = 225

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 114 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 4
           R G+   + + ++ ++ LFL   PE++    R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167


>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +2

Query: 8   VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
           VVV+  + I +SG  + NKL                   H +  ++ILW+ V GM+P K 
Sbjct: 57  VVVINTKHIVLSGTKWDNKLYRHHTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KN 115

Query: 188 ERGKNALRRLRTYDGCPPPF 247
                 ++RL  ++    P+
Sbjct: 116 NLRPTWMKRLYLFEDEHHPY 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,558,367
Number of Sequences: 59808
Number of extensions: 378245
Number of successful extensions: 1692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)