Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10993
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 121 3e-28
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 121 4e-28
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 121 4e-28
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 120 5e-28
At5g64500.1 68418.m08103 membrane protein-related contains weak ... 31 0.41
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 31 0.41
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 31 0.72
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 29 2.2
At5g61260.1 68418.m07687 chromosome scaffold protein-related con... 29 2.9
At5g19400.1 68418.m02312 expressed protein 28 3.8
At4g03180.1 68417.m00435 expressed protein 28 3.8
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 28 5.0
At2g41520.2 68415.m05131 DNAJ heat shock N-terminal domain-conta... 28 5.0
At2g41520.1 68415.m05130 DNAJ heat shock N-terminal domain-conta... 28 5.0
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 6.7
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ... 27 8.8
At1g53110.1 68414.m06014 expressed protein 27 8.8
At1g33590.1 68414.m04158 disease resistance protein-related / LR... 27 8.8
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 121 bits (292), Expect = 3e-28
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
+VVVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37 EVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T+RG AL RL+ ++G PPP+
Sbjct: 97 TKRGAAALARLKVFEGIPPPY 117
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK--DAGEKVS 468
L+ G YC +GRLS E+GW + D +++LE KRK ++ +V YE+K K++ K EKV+
Sbjct: 134 LQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS--QVMYERK-KQLNKLRTKAEKVA 190
Query: 469 K 471
+
Sbjct: 191 E 191
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 121 bits (291), Expect = 4e-28
Identities = 52/81 (64%), Positives = 62/81 (76%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
KVV+VRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37 KVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T+RG AL RL+ Y+G P P+
Sbjct: 97 TKRGAAALARLKVYEGVPTPY 117
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 447
L+ G YC +GRLS E+GW + D +++LE KRK +A V YE+K K++ K
Sbjct: 134 LQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA--HVVYERK-KQLNK 181
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 121 bits (291), Expect = 4e-28
Identities = 52/80 (65%), Positives = 62/80 (77%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
VVVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38 VVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97
Query: 188 ERGKNALRRLRTYDGCPPPF 247
+RG AL RL+ ++G PPP+
Sbjct: 98 KRGAAALARLKVFEGVPPPY 117
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 447
L+ G YC +GRLS E+GW + D +++LE KRK ++ + YE+K K++TK
Sbjct: 134 LQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERS--QALYERK-KQLTK 181
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 120 bits (290), Expect = 5e-28
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
+VVVRCE+I +SG R K+K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38 IVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97
Query: 188 ERGKNALRRLRTYDGCPPPF 247
+RG NAL RL+ ++G P P+
Sbjct: 98 KRGANALARLKVFEGVPTPY 117
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 471
L+ G YC +GRLS E+GW + D +++LE+KRK +A +K+L ++ A EKV++
Sbjct: 134 LQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKA-EKVAE 191
>At5g64500.1 68418.m08103 membrane protein-related contains weak
similarity to spinster type IV (GI:12003976) [Drosophila
melanogaster]
Length = 484
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = -2
Query: 300 FQTEDT*SSRHYNTSRLSKGGGHPSYVRSLLRAFLPRSVLCGIIPLTVFHRILDGALKWK 121
F +DT R N + L G G + ++ L + + + I+ ++ +L GA +
Sbjct: 236 FAPDDTGKPRTDNLNVLPVGYGFSAVMKDLKLLLVDKVYVTNILGYIAYNFVL-GAYSYW 294
Query: 120 GPRAGFTLHLLRRNDI 73
GP+AG+ ++ + D+
Sbjct: 295 GPKAGYNIYKMENADM 310
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 31.5 bits (68), Expect = 0.41
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
V+VV E++ +SG KL R R P +I+ VRGM+P K
Sbjct: 144 VIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KG 202
Query: 188 ERGKNALRRLRTYDGCPPP 244
G+ L+ Y G P
Sbjct: 203 RLGRALFNHLKVYKGPDHP 221
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2
Query: 174 IIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 37
+I L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 172
V C Q+ + + R K+ + L +R N+ P+R +HF SK L + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At5g61260.1 68418.m07687 chromosome scaffold protein-related
contains weak similarity to chromosome scaffold protein
p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
Length = 496
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 370 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYDTIRT 522
RK+E K+K + E+ + ++TK KV F T+I DT +T
Sbjct: 424 RKVEGKKKMITLFNNVIEETVNKLTKVRKHKVKALIGAFETVISLQDTNKT 474
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 447 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 268
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 267 YNTSRLSK 244
++T+ + +
Sbjct: 1058 FDTAHVGE 1065
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 379 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 471
+DKRKGK+ KR+ E K+ T++ E+V K
Sbjct: 97 DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 508 HRIG*W**MVLSP---STPSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 365
HRIG +L P + SH+HP S SF ++ Q C C+Q+Y Q
Sbjct: 403 HRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452
>At2g41520.2 68415.m05131 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1077
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 422 KRNLRGSPRMLVRRCRRRQHHSLPSSNPMIQLGLRNYNKNKPFGCQKKKK 571
+ +R V++ RR+ ++SLP SN + +RN +N+P + K+
Sbjct: 494 QETIRHKKLQAVKKYRRKVNNSLPKSN--LNATMRNNQENQPVNTGQAKQ 541
>At2g41520.1 68415.m05130 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profiles
PF00226: DnaJ domain, PF00515: TPR Domain
Length = 1108
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 422 KRNLRGSPRMLVRRCRRRQHHSLPSSNPMIQLGLRNYNKNKPFGCQKKKK 571
+ +R V++ RR+ ++SLP SN + +RN +N+P + K+
Sbjct: 494 QETIRHKKLQAVKKYRRKVNNSLPKSN--LNATMRNNQENQPVNTGQAKQ 541
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 119 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 235
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 764
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 418 YEKKLKRITKDAGEKVSKATTPFTTIIQSYDTIR 519
Y +K K++ K E+ SKAT P +I S D I+
Sbjct: 466 YRRK-KKLAKKKAERFSKATNPKGVMIFSVDEIK 498
>At1g53110.1 68414.m06014 expressed protein
Length = 439
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 370 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTI 495
RKL +K KAV RV E + KR D K KA +++
Sbjct: 316 RKLHEKAAAKAVIRVKKEAEKKRKELDKRAKKKKAVCKSSSV 357
>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
protein-related contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596
Length = 477
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = -2
Query: 369 NNITVFPSNFMGQSAYMTVITA-----RFQTEDT*SSRHYNTSRLSKG---GGHPSYVRS 214
N IT P+ F+ Q+ Y+ A RF ++ T +S+ G P+ V
Sbjct: 377 NEITGSPARFLNQTEYLVEFKAAGNKLRFDMGKLTFAKTLTTLDISRNLVFGKVPAMVAG 436
Query: 213 LLRAFLPRSVLCGIIPLTVF 154
L + + LCG +P+T F
Sbjct: 437 LKTLNVSHNHLCGKLPVTKF 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,539
Number of Sequences: 28952
Number of extensions: 266844
Number of successful extensions: 797
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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