Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10992
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 122 3e-28
07_01_0071 - 522920-523063,524125-524212,524289-524677 118 3e-27
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 79 3e-15
11_04_0056 + 12942802-12942920,12943022-12943115 36 0.031
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 34 0.094
04_03_0232 - 13049649-13052807 31 0.66
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 31 0.88
12_01_0645 - 5468344-5470266 29 3.5
09_04_0127 + 14883661-14884226,14884335-14885235 29 3.5
05_03_0238 - 10783451-10783735,10784686-10785762 29 3.5
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 4.7
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 4.7
05_01_0301 - 2356880-2357959 28 6.2
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 6.2
11_06_0110 + 20212221-20214011,20214072-20214368 27 8.2
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 8.2
09_02_0528 + 10253372-10254556 27 8.2
07_01_1106 - 10187609-10190041,10190292-10191932 27 8.2
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 122 bits (293), Expect = 3e-28
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
+VVVVRCE+I +SG R K+K + FLRKR N P+ GP HFR+P+KILW+TVRGMIPHK
Sbjct: 37 RVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T+RG+ AL RL+ Y+G PPP+
Sbjct: 97 TKRGEAALARLKAYEGVPPPY 117
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/51 (50%), Positives = 39/51 (76%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 447
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAY+++ K++ K
Sbjct: 134 LQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 118 bits (285), Expect = 3e-27
Identities = 50/81 (61%), Positives = 62/81 (76%)
Frame = +2
Query: 5 KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 184
+VVVVRCE++ ISG R K+K + FLRKR N P+ GP HFRAPS+I W+TVRGMIPHK
Sbjct: 37 RVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHK 96
Query: 185 TERGKNALRRLRTYDGCPPPF 247
T RG+ AL L+ +DG PPP+
Sbjct: 97 TPRGEAALANLKAFDGVPPPY 117
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/51 (52%), Positives = 40/51 (78%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITK 447
L+PG YC +G+LS E+GW Y D +R+LE+KRK KA +VAYE++ K++T+
Sbjct: 134 LQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 78.6 bits (185), Expect = 3e-15
Identities = 31/50 (62%), Positives = 40/50 (80%)
Frame = +2
Query: 98 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 247
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPY 51
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKYRDVVR 372
L+PG YC +G+LS E+GW Y D +R
Sbjct: 68 LQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 35.5 bits (78), Expect = 0.031
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 295 LKPGRNYCHVGRLSHEIGWKY 357
L+PG YC +G+LS E+GW Y
Sbjct: 44 LQPGHKYCLLGQLSKEVGWNY 64
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 191 RGKNALRRLRTYDGCPPPF 247
RG+ AL RL+ Y+G PPP+
Sbjct: 9 RGEAALARLKAYEGVPPPY 27
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 33.9 bits (74), Expect = 0.094
Identities = 24/79 (30%), Positives = 32/79 (40%)
Frame = +2
Query: 8 VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 187
VVVV E++ +SG KL R R P +I+ VRGM+P K
Sbjct: 578 VVVVNAEKVAVSGKKRSQKLYRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KG 636
Query: 188 ERGKNALRRLRTYDGCPPP 244
G+ L+ Y G P
Sbjct: 637 RLGRRLFTHLKVYKGAEHP 655
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 400 PCPSSCLQAYEQHHGISIQFHGTVCLH 320
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 338 MKLDGNTVMLFVSLKTRGRARLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPS 496
MK D +L VS LL+EL ++ LR ++ RCR+ HH + S
Sbjct: 92 MKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHVES 144
>12_01_0645 - 5468344-5470266
Length = 640
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 310 NYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAGEKVSKATTPF 486
+Y +G L E W+ RD V +LED AV AY EKK K G+ S +
Sbjct: 59 SYSGLGVLLDESLWRLRDAVEELED-----AVDEHAYHEKKTKEREVSDGDLGSSFSKMK 113
Query: 487 TTIIQSYDTIRT 522
+I+S RT
Sbjct: 114 QRVIKSLANGRT 125
>09_04_0127 + 14883661-14884226,14884335-14885235
Length = 488
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +2
Query: 398 RLLRELPMKRNLRGSPRMLVRRCRRRQHHSLPSSNPMIQLGLRNYNKNKPF 550
R +R+L ++++L+ + R +VRR R Q + PSS + L + +K+ PF
Sbjct: 439 RAVRQL-VQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTASSTSKSLPF 488
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 328 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 459
+L +EI RD+ ++ EDK +K A E K ++ K E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 335 PMKLDGNTVMLFVSLKTRGRARLLRE-LPMKRNLRGSPRMLVRRCRRRQHHSLPSSNPMI 511
P N VMLF +L++ R RLLR+ +K + P+ + R + +H + +S +
Sbjct: 360 PYVASANIVMLFDTLQSMLRLRLLRQGFKVKDEVWTLPKPVRPRLPKHEHEAYTTSQCLT 419
Query: 512 Q 514
Q
Sbjct: 420 Q 420
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 98 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 244
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>05_01_0301 - 2356880-2357959
Length = 359
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 371 VSLKTRGRARLLRELPMKRNLRGSPRMLVRRCR-RRQHHSLPSSNP 505
V LKT G LLR +P+ + R+ +R CR R + P + P
Sbjct: 76 VVLKTCGTTPLLRAVPVLLRAAAALRLRLRSCRYSRGEYLFPEAQP 121
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 319 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAY-EKKLKRITKDAG 456
H G E G +VVR L D +GKAV+R+ +++L+ + + G
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLG 211
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 27.5 bits (58), Expect = 8.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 551 QKVYFCYNFLVLIVS*DWM 495
+ +Y CYN+L ++V +W+
Sbjct: 435 KSIYLCYNYLEIVVDPEWL 453
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 398 RLLRELPMKRNLRGSPRMLVRRCRRRQ 478
R++ EL + RN+R +P+ML+ ++R+
Sbjct: 177 RIVEELGLARNVRLTPKMLIEAIKQRK 203
>09_02_0528 + 10253372-10254556
Length = 394
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 519 PNCIIGLDDGSEWCCRLRHLLTS 451
P C+ DD S W L+HLL +
Sbjct: 250 PTCVKDTDDQSSWIFELQHLLVT 272
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 117 PRAGFTLHLLRRNDISLSLFLKKLPEMLIC 28
P G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,131
Number of Sequences: 37544
Number of extensions: 323293
Number of successful extensions: 881
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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