Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10992
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   130   7e-31
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   130   7e-31
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    32   0.26 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    30   1.4  
U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   7.3  
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    27   9.6  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   9.6  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    27   9.6  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  130 bits (314), Expect = 7e-31
 Identities = 56/82 (68%), Positives = 67/82 (81%)
 Frame = +2

Query: 2   NKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH 181
           +KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PH
Sbjct: 32  DKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPH 91

Query: 182 KTERGKNALRRLRTYDGCPPPF 247
           KT RG  AL+ LR Y+G P  +
Sbjct: 92  KTNRGNEALKNLRAYEGVPAKY 113



 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = +1

Query: 289 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 468
           F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   A +  +
Sbjct: 127 FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAA 186

Query: 469 KATTPFTTIIQS 504
                +  II++
Sbjct: 187 PKIAQYQKIIEA 198


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  130 bits (314), Expect = 7e-31
 Identities = 56/82 (68%), Positives = 67/82 (81%)
 Frame = +2

Query: 2   NKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH 181
           +KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PH
Sbjct: 32  DKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPH 91

Query: 182 KTERGKNALRRLRTYDGCPPPF 247
           KT RG  AL+ LR Y+G P  +
Sbjct: 92  KTNRGNEALKNLRAYEGVPAKY 113



 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 29/72 (40%), Positives = 44/72 (61%)
 Frame = +1

Query: 289 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 468
           F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ ++   A +  +
Sbjct: 127 FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAA 186

Query: 469 KATTPFTTIIQS 504
                +  II++
Sbjct: 187 PKIAQYQKIIEA 198


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 310 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGEKV 465
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K   I  D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 418 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 308
           R+ S   C S  L  +E HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


>U70857-6|AAD31051.1|  189|Caenorhabditis elegans Hypothetical
           protein C10G8.3 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 400 PCPSSCLQAYEQHHGISIQFHGTVCLHD 317
           PCP       E+ HGI++Q  G  CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 375 LTNNITVFPSNFMGQSAYMTVITARFQTE 289
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 225 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 49
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 48  LPEMLI 31
           LPE  +
Sbjct: 210 LPEWTV 215


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 225 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 49
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 48  LPEMLI 31
           LPE  +
Sbjct: 210 LPEWTV 215


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 225 YVRSLLRAF-LPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 49
           YV+ +L++F +  S L  +  L  +  +    + WKGP      +L+  + +   +F+K 
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209

Query: 48  LPEMLI 31
           LPE  +
Sbjct: 210 LPEWTV 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,197,348
Number of Sequences: 27780
Number of extensions: 265560
Number of successful extensions: 722
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)