Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10991
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.34 
UniRef50_Q94185 Cluster: Dumpy : shorter than wild-type protein ...    33   9.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.34
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 644 AGWWYLPARTHKRS*HQ 594
           A WWYLPARTHKRS H+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q94185 Cluster: Dumpy : shorter than wild-type protein 6;
           n=1; Caenorhabditis elegans|Rep: Dumpy : shorter than
           wild-type protein 6 - Caenorhabditis elegans
          Length = 1254

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 731 VTTAPHPFKPKRVTASINNTTVTASR 654
           +T APHP KP++ T +  +TT T  +
Sbjct: 470 ITKAPHPVKPRKTTTTTTSTTTTTEK 495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,823,583
Number of Sequences: 1657284
Number of extensions: 13309272
Number of successful extensions: 22754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22751
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)