Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10991
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_19154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_24495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1404

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 657 TAEIGRMVVPTRADSQEVLTPVKSRDHAKRPSQRKD*KKPRP 532
           T++  +    +++  +E  TP K +  AK  SQ+K  KK  P
Sbjct: 61  TSDFSQPSASSKSSDEETETPAKKQQKAKHSSQKKKGKKSSP 102


>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 5   HTAHLPRGWGSGDLLP--WKKKTSHIVR 82
           H  HLP   GSG+ L   +KKK+ H+ R
Sbjct: 190 HILHLPENGGSGENLEKLYKKKSKHVAR 217


>SB_19154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 486 ISHNCLLNTIRRLKYTVPKCNLKC 415
           + HN  LNT   L + VP CN +C
Sbjct: 34  VQHNTKLNTTTPLTFGVPVCNQEC 57


>SB_24495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 447 KYTVPKCNLKCISLQATKVIEDTA*IKFELQIQYDIFNLRHTLNAR 310
           +Y V      C +  ++++ E+TA   F L  QY+ F L+ T+  R
Sbjct: 192 RYEVDSLKQACEAALSSRMTEETALFLFGLADQYNAFCLKSTVRGR 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,224,917
Number of Sequences: 59808
Number of extensions: 438494
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)