Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10991
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53760.1 68418.m06680 seven transmembrane MLO family protein ...    29   4.3  
At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein ...    28   7.5  
At1g26700.1 68414.m03252 seven transmembrane MLO family protein ...    28   7.5  
At4g10200.1 68417.m01672 hAT dimerisation domain-containing prot...    27   9.9  

>At5g53760.1 68418.m06680 seven transmembrane MLO family protein /
           MLO-like protein 11 (MLO11) identical to membrane
           protein Mlo11 [Arabidopsis thaliana]
           gi|14091592|gb|AAK53804; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 573

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 15  TCRAGGDPAICFRGKKRLHTLSAINNITSCYHSL*DRLIILKAILKVSS 161
           TC  G +P + + G ++LH    I  +T   +S    L +L AI+K+ S
Sbjct: 144 TCSEGHEPFVSYEGLEQLHRFIFIMAVTHVTYSC---LTMLLAIVKIHS 189


>At1g66500.1 68414.m07554 zinc finger (C2H2-type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type,
           domain; similar to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; similar to Pre-mRNA cleavage complex II
           protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo
           sapiens]
          Length = 416

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +2

Query: 329 RKLNMSY*IWSSNFI*AVSSMTFVACNDIHFRLHLGTVYFNLR--MVLSKQLCDIPMY*S 502
           R L  +Y + SSNF+      T V  N ++    +  V  ++   +VLSK+L D+    +
Sbjct: 151 RTLTPNYPVRSSNFVPNTPVFTNVQ-NPMNHSNMVSVVSQSMHQPIVLSKELTDLLSLLN 209

Query: 503 NDKMKQTLD 529
           N+K K+TL+
Sbjct: 210 NEKEKKTLE 218


>At1g26700.1 68414.m03252 seven transmembrane MLO family protein /
           MLO-like protein 14 (MLO14) identical to membrane
           protein Mlo14 [Arabidopsis thaliana]
           gi|14091598|gb|AAK53807; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 554

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 9   QPTCRAGGDPAICFRGKKRLHTLSAINNITSCYHSL*DRLIILKAILKV 155
           + TC  G +P + + G ++LH    I  +T   +S    L +L AI+K+
Sbjct: 137 EDTCSEGHEPFLSYEGMEQLHRFIFIMAVTHVTYSC---LTMLLAIVKI 182


>At4g10200.1 68417.m01672 hAT dimerisation domain-containing protein
           / transposase-related low similarity to transposase
           [Ipomoea purpurea] AB004906 GI:4063770
          Length = 733

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 57  KKRLHTLSAINNITSCYHSL*DRLIILKAI 146
           KKRL++L + +  T+C+H L   L I  A+
Sbjct: 397 KKRLNSLESFSGFTACFHHLQQGLKIRDAL 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,145
Number of Sequences: 28952
Number of extensions: 292825
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)