Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10990
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4G0R7 Cluster: Putative uncharacterized protein; n=4; ...    38   0.17 
UniRef50_Q4YZA3 Cluster: Putative uncharacterized protein; n=5; ...    37   0.30 
UniRef50_Q7R8C3 Cluster: Putative uncharacterized protein PY0730...    35   1.2  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.2  
UniRef50_A7RR01 Cluster: Predicted protein; n=4; Nematostella ve...    34   1.6  
UniRef50_P58030 Cluster: Cytochrome b558/566 subunit B; n=2; Sul...    34   1.6  
UniRef50_Q93F46 Cluster: Putative lipid A core: surface polymer ...    33   2.8  
UniRef50_A1ZCE9 Cluster: Putative uncharacterized protein; n=1; ...    33   2.8  
UniRef50_A2G4L7 Cluster: Beige/BEACH domain containing protein; ...    33   4.9  

>UniRef50_A4G0R7 Cluster: Putative uncharacterized protein; n=4;
           Methanococcus maripaludis|Rep: Putative uncharacterized
           protein - Methanococcus maripaludis
          Length = 1031

 Score = 37.5 bits (83), Expect = 0.17
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = +2

Query: 206 YFHYFQHLAFTLKNGFQTPSILLRSKDNNIKIKISFTFNIFALNVNAVIISHIIKCIVPI 385
           YFH F  L   +KN F T + +L +  N  K   +   NI   N+N +I+S  I  +  I
Sbjct: 629 YFHIFSEL-LRIKNEFDTANSILTTLKNKFKKVPNSRENILYGNLNELIVSRRIDSLNEI 687

Query: 386 FSYL 397
           F Y+
Sbjct: 688 FGYI 691


>UniRef50_Q4YZA3 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1698

 Score = 36.7 bits (81), Expect = 0.30
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 266 ILLRSKDNNIKIKISFTFNIFALNVNAVIISHIIKCIVPIFSYLTCRLKLMK 421
           I L++ ++  K      F I + N+N +IIS II   +P+FSYL+  LK++K
Sbjct: 725 IFLKNNNDCSKAFNFLNFFIKSNNINYIIISLIILSQIPLFSYLSKNLKIIK 776


>UniRef50_Q7R8C3 Cluster: Putative uncharacterized protein PY07300;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY07300 - Plasmodium yoelii
           yoelii
          Length = 283

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = +2

Query: 194 YNDLYFHYFQHLAFTLKNGFQTPSILLRSKDNNIKIKISFTFNIFALNVNAVIISHIIKC 373
           YN    + ++   F  +N      I+L   +NN  I I+  F+I  L  N V I++I   
Sbjct: 96  YNLDLLYEWKSYGFFFQNYINNTLIMLSQNNNNKFININKNFSIL-LGYNYVFINNIYLK 154

Query: 374 IVPIFSYLTCRLKLMKIIYFYN 439
              I++Y+ C L      YF++
Sbjct: 155 KENIYNYIACSLSSNISFYFFD 176


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 43  WYLPVRTHKRSYH 81
           WYLP RTHKRSYH
Sbjct: 572 WYLPARTHKRSYH 584


>UniRef50_A7RR01 Cluster: Predicted protein; n=4; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 325

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 172
           C N Q G  Y C  + G T  HC ++I    +   C++G I C+    GKN
Sbjct: 140 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKACVSSPCSNGSI-CNNTQDGKN 189



 Score = 34.3 bits (75), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 172
           C N Q G  Y C  + G T  HC ++I    +   C++G I C+    GKN
Sbjct: 181 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKACVSSPCSNGSI-CNNTQDGKN 230


>UniRef50_P58030 Cluster: Cytochrome b558/566 subunit B; n=2;
           Sulfolobus|Rep: Cytochrome b558/566 subunit B -
           Sulfolobus solfataricus
          Length = 314

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 218 FQHLAFTLKNGFQTPSIL-LRSKDNNIKI---KISFTFNIFALNVNAVIISHIIKCIVPI 385
           F  L F+ K  F  PSIL L   D+N+ +    ISF F    L + ++I+S   K ++P+
Sbjct: 21  FSFLQFSFKQSFMFPSILPLNIPDSNLLLVIGNISFYFFFVFLLIVSMILSLTYKSLIPL 80

Query: 386 FSYLT 400
              LT
Sbjct: 81  TIILT 85


>UniRef50_Q93F46 Cluster: Putative lipid A core: surface polymer
           ligase WaaL; n=1; Edwardsiella tarda|Rep: Putative lipid
           A core: surface polymer ligase WaaL - Edwardsiella tarda
          Length = 377

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 149 SLRAAGKNEPNRKFAYNDLYFHYFQHLAFTLKNGFQT-PSILLRSKDNNIKIKISFTFNI 325
           +++   ++ P   F YND + HYF+   FT  N      SIL  S    + +  S+  NI
Sbjct: 257 TIQQVSEHHPWLGFGYNDTFAHYFKPRNFTYNNAHSVFMSILYYSGIIGVILFFSYILNI 316

Query: 326 F 328
           F
Sbjct: 317 F 317


>UniRef50_A1ZCE9 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 225

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 37  GRWYLPVRTHKRSYHHSLLHNNYGKLRPLL 126
           G WYL VRT KR Y ++ ++ NY KLR LL
Sbjct: 179 GYWYLQVRTPKRVYKYN-VNINYCKLRKLL 207


>UniRef50_A2G4L7 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2631

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 233  FTLKNGFQTPSILLR-SKDNNIKIKI-SFTFNIFALNVNAVIISHIIKCIV 379
            F  KNGFQ  S LLR S DNNI   I    FNIF L  N  +  +++  I+
Sbjct: 1062 FLEKNGFQIISHLLRQSGDNNINYSIYQRFFNIFGLITNKELQKNLLLYIL 1112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,493,204
Number of Sequences: 1657284
Number of extensions: 7877416
Number of successful extensions: 17153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17148
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)