Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10990
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   8.6  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 364  YKMYCANF*LFNLSFKINEN 423
            + +YCA+F L  +S  INEN
Sbjct: 1995 FLLYCASFLLIGISSFINEN 2014


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 IFALNVNAVIISHIIKCIVPIFSYL 397
           IFA +V  VI+SHI +   P ++ L
Sbjct: 295 IFAYSVGVVIVSHITESPFPYWNVL 319


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 394  ITKNWHNTFYNM*NDNSIY 338
            ++K+W   F+ + NDNS++
Sbjct: 1377 LSKSWRRDFWEIFNDNSLF 1395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,659
Number of Sequences: 5004
Number of extensions: 34101
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)