Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10990
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474...    27   8.7  
02_05_0683 + 30877731-30878243                                         27   8.7  

>09_04_0493 -
           18046553-18046990,18047061-18047180,18047290-18047478,
           18047596-18047739,18048673-18048900,18049659-18049838,
           18050304-18050399,18051096-18051262,18051356-18051773,
           18052335-18052517,18053846-18053953,18054053-18054246,
           18054503-18054662
          Length = 874

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 269 LLRSKDNNIKIKISFTFNIFALNVNAVIISHIIKC--IVPIFSYLTCRLKLMKIIYFY 436
           L+++KD +  IK   T   + L  N  I + +I+C  ++P     +  L LM    FY
Sbjct: 621 LVKAKDTHKAIKTFMTIRSYGLPANVAIYNIMIECCKLLPCVKSASAVLSLMLRDGFY 678


>02_05_0683 + 30877731-30878243
          Length = 170

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 94  GAMSGGKTSCESARVGTTALPISA 23
           GA  GG T+  +AR  T A+P++A
Sbjct: 129 GASDGGSTAAMAARGSTVAVPVAA 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,171
Number of Sequences: 37544
Number of extensions: 194062
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)