Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10990
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49765| Best HMM Match : EGF (HMM E-Value=0)                         34   0.059
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         31   0.41 
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)             28   3.8  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.9  
SB_58051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_49765| Best HMM Match : EGF (HMM E-Value=0)
          Length = 508

 Score = 34.3 bits (75), Expect = 0.059
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 172
           C N Q G  Y C  + G T  HC ++I    +   C++G I C+    GKN
Sbjct: 214 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKACVSSPCSNGSI-CNNTQDGKN 263



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHC-SIITMVSLGHFCADGLI*CSLRAAGKN 172
           C N Q G  Y C  + G T  HC ++I        C +G + C+    GKN
Sbjct: 173 CNNTQDGKNYTCTCSPGYTGRHCDTVIPKPCDSSPCNNGSV-CNNTQDGKN 222



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHCSIITMVS 112
           C N Q G  Y C  + G T  HC+ +  +S
Sbjct: 321 CNNTQDGKNYTCSCSYGYTGRHCNTLKKLS 350



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHCSIITMVSL--GHFCADGLI*CSLRAAGKN 172
           C N Q G  Y C  + G T  HC  +  +       C++G + C+    GKN
Sbjct: 131 CNNTQDGKNYTCTCSPGYTGRHCDTVIPLKPCDSSPCSNGGV-CNNTQDGKN 181



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  CRNRQGGGTYPCGLTRGLTTTHC 91
           C N Q G  Y C  + G T  HC
Sbjct: 255 CNNTQDGKNYTCTCSPGYTGRHC 277


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 23   CRNRQGGGTYPCGLTRGLTTTHCSIITMVSLGHFCADG 136
            C N QGG  + C    G T  HC I     +GH C +G
Sbjct: 963  CINIQGGD-FRCACDEGYTGNHCHIDIDDCIGHECGNG 999


>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
          Length = 360

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 50  YPCGLTRGLTTTHCSIITMVSLGHFCADGLI*CSLRAAGKN 172
           Y C  T G T  HC   T     + CADG   CS+ AA  N
Sbjct: 130 YICSCTPGYTGKHCETDT-----NECADGSHTCSINAACTN 165


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 310 FHI*YFCLKRKCCYHFTYY 366
           F + Y+C  R CCY+F+YY
Sbjct: 594 FALYYYC--RCCCYNFSYY 610


>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 326 FALNVNAVIISHIIKCIVPIFSYLTCRLKLMKIIYFY 436
           +A+ +  +II  II  I+P F+ L   L  +  ++FY
Sbjct: 847 YAVGITVLIIDAIIALIIPAFANLWFALGSLPPLFFY 883


>SB_58051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 23 CRNRQGGGTYPCGLTRGLTTTHC 91
          C N Q G  Y C  + G T  HC
Sbjct: 17 CNNTQDGKNYTCTCSPGYTGRHC 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,610
Number of Sequences: 59808
Number of extensions: 239540
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)