Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10989
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    28   6.7  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   8.9  
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728     28   8.9  

>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 347 RCGRRAQRHARTHIHKYKLGADTSPTLIPSHATHTGRLPFVPLQLNFSYIVKL 189
           R G+R Q+ A    H+   G   + T  P H      LP +PL  NF  +  L
Sbjct: 19  RLGKRVQKLANLAFHRTNQGCADANTTRPDHLLL--ELPLLPLFPNFPNLASL 69


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 407 DFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 261
           D+  I  L   + +  +CI  CG  A R+AR  + +Y  G +    + P
Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226


>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
          Length = 463

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 272 SGSCR-LLTYICVYVCVRASVRGARTFRC 355
           SG CR  L Y+ +   + A VRGA TFRC
Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,636
Number of Sequences: 37544
Number of extensions: 281583
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)