Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10989
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       33   0.18 
SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)                 31   1.3  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   28   9.1  

>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = -3

Query: 564 YNYNAVSINLIYSFNRVS*FFKHLLH**MYTERASEASPRAGYLRTQNTHFLGFSNDFFS 385
           YN+   + N ++++N+   +FK  L+  M T    E   +AG  +     +    +D  +
Sbjct: 112 YNHMGHTYNKLHNYNKALDYFKQSLNAFMKT---GEERKKAGVYKNIGAVYSSLGDDGQA 168

Query: 384 HVLYKYI*CMHRKVRAPRTEA 322
            V YK+  C+H K    R +A
Sbjct: 169 MVNYKHALCIHEKFGEEREQA 189


>SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 228

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = +1

Query: 235 RRPVCVA-CDGISVGLVSAPNLYLCICVRACLCARR---PHLPMHTLYIFIKYVRKKIIG 402
           R  +C   C+ + V L +  N+YLC  +R C+CA +     +P++  Y+++ +  +  I 
Sbjct: 158 RMCICATQCECVFVPLNA--NVYLCHSMRMCICATQCECVFVPLNA-YVYLCHSMRMCIC 214

Query: 403 KSQKMCILCP 432
            +Q  C+  P
Sbjct: 215 ATQCECVFVP 224


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 354 HRKVRAPRTEARTHTYTQI*VRSRHEPDTYTITCDAHRTSSLCTATV 214
           H  V AP      H+ + I  RS+H+ D  T+T  A       T T+
Sbjct: 402 HVTVTAPTRSRHGHSTSTITSRSQHQHDHVTVTAPAQSRHGHSTNTI 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,671,330
Number of Sequences: 59808
Number of extensions: 379402
Number of successful extensions: 1039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)