Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10989
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    27   9.8  
At3g05690.1 68416.m00636 CCAAT-binding transcription factor (CBF...    27   9.8  
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    27   9.8  

>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 220 SGTKGRRPVCVACDGISVGLVSA 288
           +GT    PV V C GIS+G++S+
Sbjct: 206 NGTGSNDPVLVLCVGISIGIMSS 228


>At3g05690.1 68416.m00636 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 295

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 353 IGRCGRRAQRHARTHIH-KYKLGADTSPTLIPSHATHTGRLPFVPLQLNFSYIVKLTEY 180
           +G  G+R  + + +  H  + LG   SP L+P     T  +    L+L FS     T+Y
Sbjct: 47  VGETGQRVDKQSNSATHLAFSLGDVKSPRLVPKPHGATFSMQSPCLELGFSQPPIYTKY 105


>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 52  LDLHFSSVCDKLNTVIVS 105
           LDLHFSS+C  L T ++S
Sbjct: 442 LDLHFSSLCTHLPTALLS 459


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,413
Number of Sequences: 28952
Number of extensions: 245779
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)