Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10987
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    66   5e-12
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.026
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    29   0.56 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   3.0  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   6.9  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   6.9  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   9.1  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 33/78 (42%), Positives = 49/78 (62%)
 Frame = +3

Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
           RY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++  G+   
Sbjct: 63  RYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTD 116

Query: 435 IQATDLSEASQEAVEEKL 488
           IQATD SE + E V EK+
Sbjct: 117 IQATDFSEVAYETVLEKV 134



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +1

Query: 70  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 231
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDL 57


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.026
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 312 SKKQKLFLMSWCPDTAKVKKKMLYSSS 392
           SKK  L L+S+ P+ A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 28.7 bits (61), Expect = 0.97
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = +3

Query: 324 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 476
           K+  +  CP  A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 300 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 479
           T++      LF++ W P        M+Y+S+     + +  V K  +A D  + + EAV+
Sbjct: 79  TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137

Query: 480 EKL 488
           E L
Sbjct: 138 EFL 140


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 390 SFDALKKSLVGVQKYIQATDLSEASQ 467
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 467 GGRRREAPRHRSPITAFTHELATKPNPLSDTPALTTRGHDTTSR 598
           G    EA +  + I    HE+ T  +P+S+  A+     D +S+
Sbjct: 751 GATVNEAAKTAATIEQNEHEIQTSVDPISNVKAILPNADDVSSK 794


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 493 PPIANNSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 621
           PP++  +    +    EP +RHS     RP+ H   S +T+++
Sbjct: 37  PPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 3   CRCRGVGEVSGVIFT*ITSKNGV 71
           CRC G+ ++SG I   + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -2

Query: 609 NNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVIGDRWRGASLRRPPETL 457
           +NT R+  ++  +++A        ++    ++ VI D + G  +  PPETL
Sbjct: 112 HNTTRIRETFIDIIKALYVNEKHHYLPKQAIDVVI-DSYNGGCVNLPPETL 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,023
Number of Sequences: 5004
Number of extensions: 53193
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)