Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10987
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 75 8e-14
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 68 7e-12
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 67 2e-11
05_01_0103 + 686770-687017,687120-687270 67 2e-11
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477... 63 3e-10
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 61 8e-10
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 61 1e-09
03_06_0479 + 34217170-34217172,34217337-34217786 59 4e-09
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 47 2e-05
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 38 0.007
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665 30 1.8
11_02_0138 - 8708483-8709033,8709163-8709265,8709312-8709359,871... 29 3.1
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 28 7.2
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 28 7.2
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 74.5 bits (175), Expect = 8e-14
Identities = 35/77 (45%), Positives = 51/77 (66%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY +FDF++ T E +K K+F +SW PDT++V+ KMLY+SS D K+ L G+Q
Sbjct: 85 RYAVFDFDFV-----TDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVE 139
Query: 435 IQATDLSEASQEAVEEK 485
+QATD SE S + V+ +
Sbjct: 140 LQATDPSEMSMDIVKSR 156
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 67 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 219
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 68.1 bits (159), Expect = 7e-12
Identities = 31/79 (39%), Positives = 52/79 (65%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
R+ ++DF++ T+E K ++F + W PD AKV+ KMLY+SS + KK L G+Q
Sbjct: 85 RFAIYDFDFL-----TAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLE 139
Query: 435 IQATDLSEASQEAVEEKLR 491
+QATD E S +A++++++
Sbjct: 140 VQATDAGEISLDALKDRVK 158
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 67 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKG 240
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG 82
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY ++D ++ T E +K K+F SW PDTA+ + KMLY+SS D ++ L G+Q
Sbjct: 72 RYAVYDLDFV-----TDENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCE 126
Query: 435 IQATDLSEASQEAVEEK 485
IQATD SE S + + +
Sbjct: 127 IQATDPSEMSLDIIRAR 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 73 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 231
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATL 66
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY +FD+++ T E +K K+F ++W PDT++V+ KM+Y+SS D K+ L G+Q
Sbjct: 59 RYAIFDYDFV-----TEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVE 113
Query: 435 IQATDLSEASQEAV 476
+QATD +E + +
Sbjct: 114 LQATDPTEVGLDVI 127
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 76 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDL 231
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 53
>03_06_0174 -
32141956-32141985,32143658-32144452,32147645-32147759,
32148134-32148399,32150193-32150213
Length = 408
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY L+DF++ T E +K K+F ++W P T++++ KMLYS+S D +K+ L G
Sbjct: 72 RYALYDFDFV-----TGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYE 126
Query: 435 IQATDLSEASQ 467
IQATD +E Q
Sbjct: 127 IQATDPTETPQ 137
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 61.3 bits (142), Expect = 8e-10
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 428
RY +FDF++ T E +K K+F +SW PDT+KV+ KMLY+SS D K+ L G+Q
Sbjct: 330 RYAVFDFDFV-----TDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQ 382
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 67 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 219
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY ++DF++ T E +K K+F ++W P ++++ KMLY++S + ++ L GV
Sbjct: 72 RYAIYDFDFV-----TEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYE 126
Query: 435 IQATDLSEASQEAVEEK 485
IQATD SE E + E+
Sbjct: 127 IQATDPSELDIELLRER 143
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 67 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 231
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = +3
Query: 249 GMRYGLFDFEYT-HQCQGTSEASK-----KQKLFLMSWCPDTAKVKKKMLYSSSFDALKK 410
G RY ++D ++T T+ A + + K+F +SW P A V+ KM+Y+SS + KK
Sbjct: 64 GCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKK 123
Query: 411 SLVGVQKYIQATDLSEASQEAVEE 482
L GVQ +QATD SE + + +++
Sbjct: 124 ELDGVQIDLQATDPSELTLDVLKD 147
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +1
Query: 70 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 243
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG 64
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +3
Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
RY ++D ++ + + +K K+F +SW P ++++ K +Y+ S + + L GV
Sbjct: 78 RYAVYDLDFV-----SDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFE 132
Query: 435 IQATDLSEASQEAVEEKLRAT 497
IQATD + E + + T
Sbjct: 133 IQATDPDDMDLEVLRGRANRT 153
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 76 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 231
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F L
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASL 72
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 315 KKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRA 494
+K K+F +SW P + ++ K +Y+ + + L GV IQATD + E + +
Sbjct: 109 RKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRANR 168
Query: 495 T 497
T
Sbjct: 169 T 169
Score = 34.7 bits (76), Expect = 0.083
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 76 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 231
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F L
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92
>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
Length = 366
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/54 (42%), Positives = 28/54 (51%)
Frame = -2
Query: 495 WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTS 334
WR +SLRRP LPR R L C S++ + S P+RCP TTTS
Sbjct: 225 WR-SSLRRP---LPR-RHL-CVSDIGIDSASISSFSPAHLRLDHPFRCPATTTS 272
>11_02_0138 -
8708483-8709033,8709163-8709265,8709312-8709359,
8713887-8714359,8716353-8716508,8716572-8716617,
8716657-8716713
Length = 477
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 561 GVSESGFGFVASSCVNAVIGDRW 493
G+ +SG F A SC +IG RW
Sbjct: 109 GICQSGMSFRAKSCNRKIIGARW 131
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 745 PPFKPKRITASRQK*AGGVGTYP 677
PP +PKR+ R+K AGG G P
Sbjct: 84 PPPQPKRLQGGRKKGAGGHGKLP 106
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 103 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 249
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,008,783
Number of Sequences: 37544
Number of extensions: 415686
Number of successful extensions: 1499
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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