Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10987
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        52   4e-07
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   2e-05
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             39   0.004
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.25 
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  30   1.8  
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         30   2.4  
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)            29   5.5  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 22/62 (35%), Positives = 40/62 (64%)
 Frame = +3

Query: 306 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 485
           E + + KL L+ WCPD  ++K +M+ +++F  +KK   G  K ++  + SE S EA++E+
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALKEE 382

Query: 486 LR 491
           L+
Sbjct: 383 LK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/79 (31%), Positives = 45/79 (56%)
 Frame = +3

Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
           RY   + +Y ++     E +++ KL L+ WCPD   +K KM+ +++F  + K   G  K 
Sbjct: 64  RYVALNLDYKNE-----EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKC 118

Query: 435 IQATDLSEASQEAVEEKLR 491
           ++  D  + S EA++EKL+
Sbjct: 119 LEIQDRFDLSFEALKEKLK 137


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +3

Query: 285 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 458
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +3

Query: 246 RGMRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 425
           R  RY L+D ++  +     E      L  +SWC D A ++KKM  +S+ D ++K     
Sbjct: 70  REPRYILYDMKFPRK----EEKRIFNNLVFISWCSDKAPIEKKMKLASTQDYVRKKFSEA 125

Query: 426 QKYIQATDLSEASQEAVEEKLRAT 497
              + A D  +   + +  K   T
Sbjct: 126 TTSVNANDFDDLDYDEIAAKAEKT 149



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 180
           SG+ V D      + +K  K H+Y +F I DE  + V
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVV 40


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +3

Query: 255 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 434
           RY L+D  +  +     +      L  + WC D A +KK+M+ +++ + LK   V V+K 
Sbjct: 74  RYILYDLNFPRK-----DGRAFHHLVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKV 127

Query: 435 IQATDLSEASQEAVEEK 485
            Q  D ++ + + + +K
Sbjct: 128 FQINDRADLNYDDIADK 144



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +1

Query: 70  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 216
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 217 FLEDL 231
            LE L
Sbjct: 64  MLEKL 68


>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 458 SVSGGRRREAPRHRSPITAFTH----ELATKPNPLS 553
           + +GGRRRE P  R+P+  F      E A KP+P++
Sbjct: 45  AAAGGRRREGPTARAPVGGFAEVGNAEFAEKPSPIT 80


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -2

Query: 495  WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTT 340
            W G + R PP      RS+  TS L   TF ERR           W  P T+
Sbjct: 855  WGGTAERPPPRQSAPSRSMAITSLLCGSTF-ERRTTVLSMGVVSDWSIPATS 905


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 518 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 646
           T EL+  T+ NPL  TPAL++RG   T R+   + + N+   IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
          Length = 722

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 440 SDRPLGSVSGGRRREAPRHRSPITAFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRK 619
           + + + S++GG  + +P  + P T   +E      P +D  +  T   DT+S      R 
Sbjct: 179 NSKGVSSLAGGEVKASPSTKQPTTVQANETC----PEADVSSFETETADTSSSTTSRARN 234

Query: 620 TNSIN 634
           TN+ N
Sbjct: 235 TNAQN 239


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -2

Query: 489 GASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTSGRAS 322
           G + R PP      R +  TS L   TF ERR           W  P T  +G AS
Sbjct: 651 GTAERLPPRQSAPSRFMAITSLLCGSTF-ERRTTVLSMGVVSDWSVPATRCAGTAS 705


>SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 203 PNTNSSSRICRRAVPGNEIW 262
           PNT SS  IC+    GN IW
Sbjct: 72  PNTTSSDYICKLVTGGNFIW 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,417,908
Number of Sequences: 59808
Number of extensions: 454975
Number of successful extensions: 1523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)