Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10985
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   93   2e-19
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   6e-10
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 44/78 (56%), Positives = 50/78 (64%)
 Frame = +3

Query: 510 IDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIPFFTIFIGVN 689
           +D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ +FIGVN
Sbjct: 67  LDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVN 126

Query: 690 ITFFPQHFLGLAGIPRRY 743
           ITFFPQHFLGLAG PRRY
Sbjct: 127 ITFFPQHFLGLAGFPRRY 144



 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 43/65 (66%), Positives = 55/65 (84%)
 Frame = +1

Query: 313 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 492
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 493 ILANS 507
           ILANS
Sbjct: 61  ILANS 65


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 28/40 (70%), Positives = 30/40 (75%)
 Frame = +3

Query: 624 TGLSLNSYILKIPFFTIFIGVNITFFPQHFLGLAGIPRRY 743
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRY
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRY 58


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 292 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 441
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 611 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 733
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 708 HFLGLAGIPRRY 743
           HFLGLAG PRRY
Sbjct: 1   HFLGLAGFPRRY 12


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,266
Number of Sequences: 59808
Number of extensions: 277529
Number of successful extensions: 485
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)