Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AA68 Cluster: UDP-glucose 6-dehydrogenase; n=3; root|...    34   1.9  
UniRef50_A3AC67 Cluster: Putative uncharacterized protein; n=3; ...    33   3.4  
UniRef50_A6DTB9 Cluster: Pseudouridine synthase; n=1; Lentisphae...    33   5.9  
UniRef50_Q7QRY1 Cluster: GLP_549_14267_17467; n=1; Giardia lambl...    33   5.9  
UniRef50_A6CE44 Cluster: Putative uncharacterized protein; n=1; ...    32   7.8  

>UniRef50_Q6AA68 Cluster: UDP-glucose 6-dehydrogenase; n=3;
           root|Rep: UDP-glucose 6-dehydrogenase -
           Propionibacterium acnes
          Length = 388

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +1

Query: 85  NLQWSIKISLTHDIESMMEQKLIRNRYHKTIRGLCKD*HFGSHMKNRIFSFGPRCSPR 258
           N   ++++S  +++++   Q+ +  R  + I G+C D   G+H  N  F +G  C P+
Sbjct: 201 NTYLAMRVSFFNELDTYASQRGLSTR--QVIDGVCLDPRIGNHYNNPSFGYGGYCLPK 256


>UniRef50_A3AC67 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 522

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = -3

Query: 257 LGEHRGPNENMRFFIWLPKC*SLHNPLIVLWYLFR--INFCSIMLSISCVSEIFIDHCKF 84
           L  H G   N R+  W+ +     NP ++L +L    +  C+++ ++   S  F++H  +
Sbjct: 432 LNRHHGRRLN-RWLAWVARR-HFDNPWLILAWLAAAVLLLCTLVQTVFACS--FVEHRNY 487

Query: 83  KLRHLSIKSVIWVFGISVKTAGYIYNM 3
           K+ +    S+ ++ G+    A Y+YN+
Sbjct: 488 KVVYRRYASLFFLVGVDNDEALYVYNL 514


>UniRef50_A6DTB9 Cluster: Pseudouridine synthase; n=1; Lentisphaera
           araneosa HTCC2155|Rep: Pseudouridine synthase -
           Lentisphaera araneosa HTCC2155
          Length = 290

 Score = 32.7 bits (71), Expect = 5.9
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 64  IDRCRSLNLQWSIKISLTHDIESMMEQKLIRNRYHKTIRGLCKD*HFGSHMKNRI 228
           IDR  +  + +S K+S+  D + + E +L+   YH    G   D  +  H+KNRI
Sbjct: 131 IDRLTAGLVFFSKKVSIRKDYQLLFENRLVEKTYHAISAGPAPDQGYW-HLKNRI 184


>UniRef50_Q7QRY1 Cluster: GLP_549_14267_17467; n=1; Giardia lamblia
            ATCC 50803|Rep: GLP_549_14267_17467 - Giardia lamblia
            ATCC 50803
          Length = 1066

 Score = 32.7 bits (71), Expect = 5.9
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +1

Query: 22   AVFTEIPKTQITDLIDRCRSLNL--QWSIKISLTHD-IESMMEQKLIRN 159
            A++++I      D I RC + NL  +WS ++ LTH  + S  +Q LI+N
Sbjct: 1018 AIYSQIISANAVDFIKRCWTFNLDLRWSPELMLTHPWLVSRPKQLLIQN 1066


>UniRef50_A6CE44 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 458

 Score = 32.3 bits (70), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 22  AVFTEIPKTQITDLIDRCRSLNLQWSIKISLTH 120
           A+ T +P  +I DL+ RC  +  +WSI  SL H
Sbjct: 88  AIRTSVPGIEIVDLMPRCAQIMEKWSIIRSLHH 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,155,793
Number of Sequences: 1657284
Number of extensions: 10728431
Number of successful extensions: 20400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20400
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)