Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   1.4  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   7.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   7.5  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   9.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 527  DCDSAAYNRDPSIF--VRLFGDRWRYSYRRNSTTQFRLSR 414
            DCD AAY + P +F   R F D  RY       T+F LSR
Sbjct: 1008 DCDIAAYTQFPGVFEEYRQFVD--RYGDLTTVPTKFFLSR 1045


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 509 YNRDPSIFVRLFGDRWRYSYRRNSTTQFRL 420
           Y   P   +R  GD W Y  R N    FRL
Sbjct: 289 YQISPYSCLRNTGDPWEYMSRSNGLLLFRL 318


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 283 AMMVSHPFIYKLDRNSR 333
           AM + + F+YKLDR  R
Sbjct: 239 AMFIVYSFVYKLDRRGR 255


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +3

Query: 492 RRISIVGSGITILEMSGLFS 551
           +R++IVG+G   +E++G+F+
Sbjct: 179 KRVAIVGAGYIAVELAGVFA 198


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 556 IVENSPLISRIVIPLPTIEILRYSYDYSAIDGVTLTGVTVLR 431
           ++E SP+   ++I     EI+RY++    ++G     +T LR
Sbjct: 96  VIEGSPIYLSMIIAWSITEIIRYAFYAFNLNGDIPAFLTWLR 137


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 251  EHRGPNENMRFFIWLPKC*SLHNPLIVLWYLFRINFC----SIMLSISCVSEI 105
            EH GP   M    W+P   +L NPL    Y+  +N C     +++ I+C+ ++
Sbjct: 969  EHIGP---MLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIACLFDL 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,816
Number of Sequences: 5004
Number of extensions: 48304
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)