Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1266 + 27444755-27444760,27445598-27446740                       29   3.3  
01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    27   7.6  

>12_02_1266 + 27444755-27444760,27445598-27446740
          Length = 382

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 143 CSIMLSISCVSEIF-IDHCKFKLRHLSIKSVIWVFGISVKTAGYIYNM 3
           C   L  S  SEIF ++H       +++ S +  + +SV+  GYIY+M
Sbjct: 279 CQWALMPSITSEIFGLNHFGTIFNVVAVASPVGSYILSVRVVGYIYDM 326


>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +1

Query: 31  TEIPKTQITDLIDRCRSLNLQWSIKISLTHDI 126
           T + + +  D++++CRS  L W +  S+  ++
Sbjct: 160 TGVGRNEFIDIMNKCRSKKLMWKLNKSIAKEL 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,435
Number of Sequences: 37544
Number of extensions: 273082
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)