Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ...    30   1.3  
AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ion
           channel protein 30 protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -3

Query: 182 PLIVLWYLFRINFCSIMLSISCVSEIFIDHCKFKLRHLSIKSVIW 48
           PL+ ++Y+  I   SI    +C S IF+   KF LR+ S +SV W
Sbjct: 348 PLMGIYYMTLICIVSIA---TCTSSIFVHLEKFALRNPSWQSVPW 389


>AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.4 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 149 NFCSIMLSISCVSEIFIDHCKFKLRHLSIKS 57
           NF   + S++C+SEI    C F+  H++IKS
Sbjct: 186 NFQIEIGSLNCISEIMDHICHFECFHINIKS 216


>Z81037-4|CAB02747.2|  391|Caenorhabditis elegans Hypothetical
           protein C17E4.6 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 145 KLIRNRYHKTIRGLCKD*HFGSHMKNRIFSFGPRCSPR 258
           K+IR+RYHK +R +  +    +++K+      P+ SPR
Sbjct: 317 KVIRDRYHKHLRSIRGNDEVTTYLKSLKALPSPQISPR 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,040
Number of Sequences: 27780
Number of extensions: 266396
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)