Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 218 FIWLPKC*SLHNPLI 174
           F+WL  C SL NP+I
Sbjct: 412 FLWLGYCNSLLNPII 426


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 173 VLWYLFRINFCSIMLSISCVSEIFIDHCKFKLRHLSIKSVIWVF 42
           + W   ++  C  + + S + E   +H K+     +I+S I +F
Sbjct: 130 IQWSKLQVFDCRYVTTTSGMFEALCNHIKYSTNKGNIRSAITIF 173


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = -3

Query: 521 DSAAYNRDPSIFVRLFGDRWRYSYRRNSTTQFRLSRNQ 408
           D   Y  DP +        W Y +R  S ++F +   Q
Sbjct: 711 DRLHYETDPCVRYYPRRKEWLYLHRARSESEFEMYHQQ 748


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -3

Query: 173 VLWYLFRINFCSIMLSISCVSEIFIDHCKFKLRHLSIKSVIWVF 42
           VL  +  I   ++++ I+C   +        L HL+I  ++  F
Sbjct: 46  VLMIISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTF 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,107
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)