Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10984X
         (556 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35220.1 68414.m04368 expressed protein                             28   4.8  
At3g50380.1 68416.m05511 expressed protein                             27   6.4  

>At1g35220.1 68414.m04368 expressed protein
          Length = 1028

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  TEIPKTQITDLIDRCRSLNLQWSIKISLTHD 123
           T I + +  D++++CRS  + W +  S+  D
Sbjct: 156 TGIGRNEFIDIMNKCRSKKIMWKLNKSIAKD 186


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 103 LLTIANSNFDIYQLNQLFGSLEFR 32
           L+T+ +  FD+ QLNQLF    F+
Sbjct: 36  LITLRSFRFDVSQLNQLFDESNFQ 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,117,408
Number of Sequences: 28952
Number of extensions: 241266
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)