Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10979
         (625 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    48   2e-07
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   6.0  
AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant r...    23   7.9  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   7.9  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
 Frame = +1

Query: 271 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEE 444
           E+  E  +++DK+ +G +  AEL H +T LGE+L D E+D ++++     D DG + Y  
Sbjct: 85  EDFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAP 144

Query: 445 FVTMM 459
           F+  M
Sbjct: 145 FLKKM 149



 Score = 44.4 bits (100), Expect = 3e-06
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = +2

Query: 23  MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 202
           MA+ L + +I + +  FS++D +G G +   +LG  +R+L  NPT  EL   +      G
Sbjct: 1   MANDLKDVEIEKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPT-IELIGKMGGTQKRG 59

Query: 203 NGTIDFPEFLTMMAR 247
              I F EFL + ++
Sbjct: 60  EKKIKFEEFLPIFSQ 74



 Score = 39.1 bits (87), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 56  EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV--DADGNGTIDFPEF 229
           +F E   L+DK+ DGT+   EL   + +LG+   + EL +++ +     D +G I +  F
Sbjct: 86  DFLECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAPF 145

Query: 230 LTMMARKM 253
           L  M   M
Sbjct: 146 LKKMMDNM 153



 Score = 27.9 bits (59), Expect = 0.28
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +1

Query: 271 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 450
           E+ +  F V+D +G+G + A +L + +  L    T E + +M       G+ ++ +EEF+
Sbjct: 11  EKAQFVFSVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKM-GGTQKRGEKKIKFEEFL 69

Query: 451 TMMT 462
            + +
Sbjct: 70  PIFS 73


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 301  DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 429
            D++GN      E     T +G +++  +VD  +RE +    GQ
Sbjct: 1061 DQEGNDMEREVETSDEFTGIGIRVSFTQVDAEMREMNQLSGGQ 1103


>AF364130-1|AAL35506.1|  417|Anopheles gambiae putative odorant
           receptor Or1 protein.
          Length = 417

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 241 HHCQELGKVYRAVSVRVYFIDHVLKFG 161
           HH +  G +Y  V+  V F   +L FG
Sbjct: 253 HHSKVYGTMYAKVTECVLFHKDILSFG 279


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  RSPSLRRHSHCSTKTAMAPSRPKS 119
           RSP  RR S  +  T+   SRP S
Sbjct: 272 RSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,773
Number of Sequences: 2352
Number of extensions: 9638
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)